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Methods: Quality scores and SNP detection in sequencing-by-synthesis systems
- William Brockman,
- Pablo Alvarez,
- Sarah Young,
- Manuel Garber,
- Georgia Giannoukos,
- William L. Lee,
- Carsten Russ,
- Eric S. Lander,
- Chad Nusbaum,
- and David B. Jaffe
Genome Res. May 2008 18: 763-770; Published in Advance January 22, 2008, doi:10.1101/gr.070227.107
.... Other basecallers such as LifeTrace ( Walther et al. 2001 ) and KB ( Applied Biosystems, Inc. 2004 ) also produce phred -like quality scores. The quality scores compress a variety of types of information about the quality of basecalls into a readily usable probability-of-error value. Many analysis tools...
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Methods: Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
- Bastien Chevreux,
- Thomas Pfisterer,
- Bernd Drescher,
- Albert J. Driesel,
- Werner E.G. Müller,
- Thomas Wetter,
- and Sándor Suhai
Genome Res. June 2004 14: 1147-1159; Published in Advance May 12, 2004, doi:10.1101/gr.1917404
...base-call error probabilities and signal analysis capabilities of the automatic editor very sparsely. Article and publication are at http://www.genome.org/cgi/doi/10.1101/gr.1917404. Article published online before print in May 2004. ↵ 7 Corresponding author. E-MAIL bastien...

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