Searching journal content for articles similar to Volik et al. 16 (3): 394.

Displaying results 1-7 of 7
For checked items
  1. Research: Assessment of palindromes as platforms for DNA amplification in breast cancer
    • Jamie Guenthoer,
    • Scott J. Diede,
    • Hisashi Tanaka,
    • Xiaoyu Chai,
    • Li Hsu,
    • Stephen J. Tapscott,
    • and Peggy L. Porter
    Genome Res. February 2012 22: 232-245; Published in Advance July 13, 2011, doi:10.1101/gr.117226.110
    ...–fusion–bridge (BFB) cycle. Therefore, palindromes might be associated with gene amplicons in breast cancer. To address this possibility, we coupled high-resolution palindrome profiling by the Genome-wide Analysis of Palindrome Formation (GAPF) assay with -wide copy-number analyses on a set of breast cancer cell...
  2. Research: Transcriptional consequences of genomic structural aberrations in breast cancer
    • Koichiro Inaki,
    • Axel M. Hillmer,
    • Leena Ukil,
    • Fei Yao,
    • Xing Yi Woo,
    • Leah A. Vardy,
    • Kelson Folkvard Braaten Zawack,
    • Charlie Wah Heng Lee,
    • Pramila Nuwantha Ariyaratne,
    • Yang Sun Chan,
    • Kartiki Vasant Desai,
    • Jonas Bergh,
    • Per Hall,
    • Thomas Choudary Putti,
    • Wai Loon Ong,
    • Atif Shahab,
    • Valere Cacheux-Rataboul,
    • Radha Krishna Murthy Karuturi,
    • Wing-Kin Sung,
    • Xiaoan Ruan,
    • Guillaume Bourque,
    • Yijun Ruan,
    • and Edison T. Liu
    Genome Res. May 2011 21: 676-687; Published in Advance April 5, 2011, doi:10.1101/gr.113225.110
    ...no evidence for a transcript in current databases (see Supplemental Glossary). Genome Research 677 www..org Fusion genes in breast cancer had previously pioneered pair-end-tag sequencing of full-length cDNA from the MCF-7 transcriptome (Ruan et al. 2007). This RNA paired-end-tag (RNA-PET) approach captures...
    OPEN ACCESS ARTICLE
  3. LETTER: A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
    • Oliver A. Hampton,
    • Petra Den Hollander,
    • Christopher A. Miller,
    • David A. Delgado,
    • Jian Li,
    • Cristian Coarfa,
    • Ronald A. Harris,
    • Stephen Richards,
    • Steven E. Scherer,
    • Donna M. Muzny,
    • Richard A. Gibbs,
    • Adrian V. Lee,
    • and Aleksandar Milosavljevic
    Genome Res. February 2009 19: 167-177; Published in Advance December 3, 2008, doi:10.1101/gr.080259.108
    ...A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome Oliver A. Hampton 1 , 3 , 5 , Petra Den Hollander 4 , 5 , Christopher A. Miller 1 , 3 , David A. Delgado 4...
    OPEN ACCESS ARTICLE
  4. Methods: Scanning the human genome at kilobase resolution
    • Jun Chen,
    • Yeong C. Kim,
    • Yong-Chul Jung,
    • Zhenyu Xuan,
    • Geoff Dworkin,
    • Yanming Zhang,
    • Michael Q. Zhang,
    • and San Ming Wang
    Genome Res. May 2008 18: 751-762; Published in Advance February 21, 2008, doi:10.1101/gr.068304.107
    ...Scanning the human genome at kilobase resolution Jun Chen 1 , 6 , 7 , Yeong C. Kim 1 , 6 , Yong-Chul Jung 1 , Zhenyu Xuan 2 , Geoff Dworkin 3 , Yanming Zhang 4 , Michael Q. Zhang 2 , and San Ming Wang 1 , 5...
  5. LETTER: Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)
    • Yijun Ruan,
    • Hong Sain Ooi,
    • Siew Woh Choo,
    • Kuo Ping Chiu,
    • Xiao Dong Zhao,
    • K.G. Srinivasan,
    • Fei Yao,
    • Chiou Yu Choo,
    • Jun Liu,
    • Pramila Ariyaratne,
    • Wilson G.W. Bin,
    • Vladimir A. Kuznetsov,
    • Atif Shahab,
    • Wing-Kin Sung,
    • Guillaume Bourque,
    • Nallasivam Palanisamy,
    • and Chia-Lin Wei
    Genome Res. June 2007 17: 828-838; doi:10.1101/gr.6018607
    ...either normal or unusual compositions. This unique nature of PET analysis makes it an ideal tool for uncovering unconventional features residing in the human genome. Using the PET approach for comprehensive transcriptome analysis, we were able to identify fusion transcripts derived from genome...
    OPEN ACCESS ARTICLE
  6. Research: Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes
    • Axel M. Hillmer,
    • Fei Yao,
    • Koichiro Inaki,
    • Wah Heng Lee,
    • Pramila N. Ariyaratne,
    • Audrey S.M. Teo,
    • Xing Yi Woo,
    • Zhenshui Zhang,
    • Hao Zhao,
    • Leena Ukil,
    • Jieqi P. Chen,
    • Feng Zhu,
    • Jimmy B.Y. So,
    • Manuel Salto-Tellez,
    • Wan Ting Poh,
    • Kelson F.B. Zawack,
    • Niranjan Nagarajan,
    • Song Gao,
    • Guoliang Li,
    • Vikrant Kumar,
    • Hui Ping J. Lim,
    • Yee Yen Sia,
    • Chee Seng Chan,
    • See Ting Leong,
    • Say Chuan Neo,
    • Poh Sum D. Choi,
    • Hervé Thoreau,
    • Patrick B.O. Tan,
    • Atif Shahab,
    • Xiaoan Ruan,
    • Jonas Bergh,
    • Per Hall,
    • Valère Cacheux-Rataboul,
    • Chia-Lin Wei,
    • Khay Guan Yeoh,
    • Wing-Kin Sung,
    • Guillaume Bourque,
    • Edison T. Liu,
    • and Yijun Ruan
    Genome Res. May 2011 21: 665-675; Published in Advance April 5, 2011, doi:10.1101/gr.113555.110
    ...using fragment sizes of 1, 10, and 20 Kb, and have found that 10 Kb is the optimal fragment size for SV analysis. Here, we report the characteristics of the genomic architectures of two epithelial cancers, i.e., breast and gastric cancers. We comprehensively mapped SVs of eight breast cancer samples...
    OPEN ACCESS ARTICLE
  7. LETTER: Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution
    • Graham R. Bignell,
    • Thomas Santarius,
    • Jessica C.M. Pole,
    • Adam P. Butler,
    • Janet Perry,
    • Erin Pleasance,
    • Chris Greenman,
    • Andrew Menzies,
    • Sheila Taylor,
    • Sarah Edkins,
    • Peter Campbell,
    • Michael Quail,
    • Bob Plumb,
    • Lucy Matthews,
    • Kirsten McLay,
    • Paul A.W. Edwards,
    • Jane Rogers,
    • Richard Wooster,
    • P. Andrew Futreal,
    • and Michael R. Stratton
    Genome Res. September 2007 17: 1296-1303; Published in Advance August 3, 2007, doi:10.1101/gr.6522707
    .... , et al. ( 2006 ) Decoding the fine-scale structure of a breast cancer and transcriptome . Genome Res. 16 : 394 – 404 . Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution Graham R. Bignell 1 , Thomas Santarius 1 , Jessica C.M. Pole 2 , Adam P. Butler 1...
For checked items

Search Results

New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research