Searching journal content for articles similar to Villalba de la Peña et al. 33 (4): 599.

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  1. Corrigendum: Corrigendum: Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa
    • Mariana Villalba de la Peña,
    • Pauliina A.M. Summanen,
    • Martta Liukkonen,
    • and Ilkka Kronholm
    Genome Res. May 2023 33: 836-837; doi:10.1101/gr.278126.123
    ...Corrigendum: Chromatin structure influences rate and spectrum of spontaneous mutations in Neurospora crassa Mariana Villalba de la Peña , Pauliina A.M. Summanen , Martta Liukkonen and Ilkka Kronholm Genome Research 33: 599–611 (2023) The authors would like to correct formula S14 and the calculation error...
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  2. Research: Synergistic regulation by H3K36 and H3K27 methylation defines the chromatin landscape to control virulence and secondary metabolism in a fungal pathogen
    • Xingmin Han,
    • Chenghui Xu,
    • Yiyi Ren,
    • Meiling Guo,
    • Jiayue Yan,
    • Xuan Wang,
    • Chao Liu,
    • Qin Gu,
    • Xing-Xing Shen,
    • Zhonghua Ma,
    • and Yun Chen
    Genome Res. November 2025 35: 2472-2487; Published in Advance October 14, 2025, doi:10.1101/gr.280560.125
    ...methyltransferases, Set2 and Ash1, with diverse functions. For example, in Neurospora crassa, Set2 targets actively transcribed genes, whereas Ash1 represses silent genes and is essential for viability (Bicocca et al. 2018). Similarly, in Fusarium fujikuroi and Magnaporthe oryzae, Set2 and Ash1 exhibit distinct...
  3. Research: Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii
    • Eugenio López-Cortegano,
    • Rory J. Craig,
    • Jobran Chebib,
    • Eniolaye J. Balogun,
    • and Peter D. Keightley
    Genome Res. January 2023 33: 45-60; Published in Advance December 12, 2022, doi:10.1101/gr.276957.122
    ....keightley@ed.ac.ukAbstractGenetic variation originates from several types of spontaneous mutation, including single-nucleotide substitutions, short insertions and deletions (indels), and larger structural changes. Structural mutations (SMs) drive evolution and are thought to play major roles in evolutionary adaptation, speciation...
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  4. LETTER: Large-scale structure of genomic methylation patterns
    • Robert A. Rollins,
    • Fatemeh Haghighi,
    • John R. Edwards,
    • Rajdeep Das,
    • Michael Q. Zhang,
    • Jingyue Ju,
    • and Timothy H. Bestor
    Genome Res. February 2006 16: 157-163; Published in Advance December 19, 2005, doi:10.1101/gr.4362006
    ...eukaryotes that have methylated s, and in the ascomycete fungus Neurospora crassa all methylated sequences were found to be transposon derived ( Selker et al. 2003 ). Transposons are also specific targets of methylation in plants ( Tompa et al. 2002 ) and mammals ( Bourc'his and Bestor 2004...
  5. LETTER: Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data
    • Austen R.D. Ganley and
    • Takehiko Kobayashi
    Genome Res. February 2007 17: 184-191; Published in Advance January 2, 2007, doi:10.1101/gr.5457707
    ..., and S. paradoxus , and 534 bp for A. nidulans . The value for C. neoformans is not known, but we used 500 bp as an estimate. rDNA coverage level calculated in this way was consistently lower than overall coverage level, but this is not surprising as regions of unusual chromatin structure...
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