Searching journal content for articles similar to Vermeirssen et al. 17 (7): 1061.

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  1. RESOURCE: Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity
    • Natalia J. Martinez,
    • Maria C. Ow,
    • John S. Reece-Hoyes,
    • M. Inmaculada Barrasa,
    • Victor R. Ambros,
    • and Albertha J.M. Walhout
    Genome Res. December 2008 18: 2005-2015; Published in Advance November 3, 2008, doi:10.1101/gr.083055.108
    ...expression. While TFs physically interact with cis -regulatory DNA elements to activate or repress gene expression, miRNAs mainly repress gene expression post-transcriptionally by imperfect base-pairing to sequences located in the 3′UTR of their target mRNAs (for review, see Bartel 2004 ; Walhout 2006...
  2. Research: Complex expression dynamics and robustness in C. elegans insulin networks
    • Ashlyn D. Ritter,
    • Yuan Shen,
    • Juan Fuxman Bass,
    • Sankarganesh Jeyaraj,
    • Bart Deplancke,
    • Arnab Mukhopadhyay,
    • Jian Xu,
    • Monica Driscoll,
    • Heidi A. Tissenbaum,
    • and Albertha J.M. Walhout
    Genome Res. June 2013 23: 954-965; Published in Advance March 28, 2013, doi:10.1101/gr.150466.112
    ...of Drosophila insulin-like peptides. PLoS Genet 6: e1000857. Grove CA, De Masi F, Barrasa MI, Newburger DE, Alkema MJ, Bulyk ML, Walhout AJ. 2009. A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. Cell 138: 314–327. Ritter et al. 964 Genome Research www...
  3. REVIEW: Unraveling transcription regulatory networks by protein–DNA and protein–protein interaction mapping
    • Albertha J.M. Walhout
    Genome Res. December 2006 16: 1445-1454; Published in Advance October 19, 2006, doi:10.1101/gr.5321506
    ...successfully. This is important as TFs that are expressed at low levels or in only a few cells in an organism are difficult to retrieve from standard cDNA libraries ( Deplancke et al. 2004 ). Recently, we used the Gateway-compatible Y1H system to map a first C. elegans gene-centered protein–DNA interaction...
  4. Perspective: Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression
    • Lesley T. MacNeil and
    • Albertha J.M. Walhout
    Genome Res. May 2011 21: 645-657; Published in Advance February 4, 2011, doi:10.1101/gr.097378.109
    ...in multicellular organisms (e.g., Odomet al. 2004; Carroll et al. 2005; Cao et al. 2010). The second, gene-centered (DNA-to-protein) methods for the identification of TF–target gene interactions start with a regulatory genomic DNA sequence and identify the repertoire of TFs with which this sequence can interact...
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