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LETTER: Centromere Repositioning
- Giuseppe Montefalcone,
- Sergio Tempesta,
- Mariano Rocchi,
- and Nicoletta Archidiacono
Genome Res. December 1, 1999 9: 1184-1188; doi:10.1101/gr.9.12.1184
....H. ( 1999 ) Large genomic duplicons map to sites of instability in the Prader-Willi/Angelman syndrome chromosome region (15q11-q13) Hum. Mol. Genet. 8 : 1025 – 1037 . ↵ du Sart D. , Cancilla M.R. , Earle E. , Mao J. , Saffery R. , Tainton K.M. , Kalitsis P. , Martin J. , Barry A.E. , Choo K.H.A. ( 1997...
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LETTER: Recurrent Sites for New Centromere Seeding
- Mario Ventura,
- Stefania Weigl,
- Lucia Carbone,
- Maria Francesca Cardone,
- Doriana Misceo,
- Mariagrazia Teti,
- Pietro D'Addabbo,
- Annelise Wandall,
- Erik Björck,
- Pieter J. de Jong,
- Xinwei She,
- Evan E. Eichler,
- Nicoletta Archidiacono,
- and Mariano Rocchi
Genome Res. September 2004 14: 1696-1703; doi:10.1101/gr.2608804
...), and that two human neocentromeres mapped to duplicons that flanked the ancestral centromere. These findings have established a still unclear, but intriguing connection between duplicon remains in a dispersed ancestral centromeric area and neocentromere emergence in clinical cases, as if the region retained...
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INSIGHT/OUTLOOK: Centromere on the Move
- Lee H. Wong and
- K. H. Andy Choo
Genome Res. April 1, 2001 11: 513-516; doi:10.1101/gr.183901
...paints and a panel of BACs/cosmids spanning the entire X chromosome. Based on the relative map positions of these probes, they conclude that the lemur X chromosomes are isosequential to the human X chromosome (Fig. 1 ). They then propose that neocentromere activation may account for the centromere...
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PERSPECTIVE: Ancestral genomes reconstruction: An integrated, multi-disciplinary approach is needed
- Mariano Rocchi,
- Nicoletta Archidiacono,
- and Roscoe Stanyon
Genome Res. December 2006 16: 1441-1444; Published in Advance October 19, 2006, doi:10.1101/gr.5687906
...in chromosome 3 of OWMs ( Ventura et al. 2004 ). Clinical neocentromeres at 5q24–26 map to duplicons, which flanked an ancestral centromere at 15q25 ( Ventura et al. 2003 ). This ancestral centromere was inactivated following the fission of the ancestral chromosome that generated Hominoidea chromosomes 14...
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Letter: Evolutionary descent of a human chromosome 6 neocentromere: A jump back to 17 million years ago
- Oronzo Capozzi,
- Stefania Purgato,
- Pietro D'Addabbo,
- Nicoletta Archidiacono,
- Paola Battaglia,
- Anna Baroncini,
- Antonella Capucci,
- Roscoe Stanyon,
- Giuliano Della Valle,
- and Mariano Rocchi
Genome Res. May 2009 19: 778-784; doi:10.1101/gr.085688.108
...in the same sequence domain where ancestral centromeres were seeded (Ventura et al. 2003; Cardone et al. 2006; Capozzi et al. 2008) or where an ancestral centromere was inactivated (Ventura et al. 2004). In the present case, mapping data and sequence features suggest that the neocentromere locus was seeded...
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Resource: Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution
- Flavia Angela Maria Maggiolini,
- Ashley D. Sanders,
- Colin James Shew,
- Arvis Sulovari,
- Yafei Mao,
- Marta Puig,
- Claudia Rita Catacchio,
- Maria Dellino,
- Donato Palmisano,
- Ludovica Mercuri,
- Miriana Bitonto,
- David Porubský,
- Mario Cáceres,
- Evan E. Eichler,
- Mario Ventura,
- Megan Y. Dennis,
- Jan O. Korbel,
- and Francesca Antonacci
Genome Res. November 2020 30: 1680-1693; Published in Advance October 22, 2020, doi:10.1101/gr.265322.120
...and found a total of 13 regions associated with cores. Among them, nine map at the BPs of inversions that overlap the aforementioned disease-associated regions (Table 1). Core duplicons have been previously described to be associated with the burst of SDs in the human–great ape ancestral lineage (Rao et al...
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Research: Hominoid fission of chromosome 14/15 and the role of segmental duplications
- Giuliana Giannuzzi,
- Michele Pazienza,
- John Huddleston,
- Francesca Antonacci,
- Maika Malig,
- Laura Vives,
- Evan E. Eichler,
- and Mario Ventura
Genome Res. November 2013 23: 1763-1773; Published in Advance September 27, 2013, doi:10.1101/gr.156240.113
...M,Mudge JM, Palumbo V, Burn S, Blennow E, Pierluigi M, Giorda R, Zuffardi O, Archidiacono N, Jackson MS, et al. 2003. Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25. Genome Res 13: 2059–2068. VenturaM, Antonacci F, CardoneMF, Stanyon R, D’Addabbo P, Cellamare A...
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Resource: The genome of the vervet (Chlorocebus aethiops sabaeus)
- Wesley C. Warren,
- Anna J. Jasinska,
- Raquel García-Pérez,
- Hannes Svardal,
- Chad Tomlinson,
- Mariano Rocchi,
- Nicoletta Archidiacono,
- Oronzo Capozzi,
- Patrick Minx,
- Michael J. Montague,
- Kim Kyung,
- LaDeana W. Hillier,
- Milinn Kremitzki,
- Tina Graves,
- Colby Chiang,
- Jennifer Hughes,
- Nam Tran,
- Yu Huang,
- Vasily Ramensky,
- Oi-wa Choi,
- Yoon J. Jung,
- Christopher A. Schmitt,
- Nikoleta Juretic,
- Jessica Wasserscheid,
- Trudy R. Turner,
- Roger W. Wiseman,
- Jennifer J. Tuscher,
- Julie A. Karl,
- Jörn E. Schmitz,
- Roland Zahn,
- David H. O'Connor,
- Eugene Redmond,
- Alex Nisbett,
- Béatrice Jacquelin,
- Michaela C. Müller-Trutwin,
- Jason M. Brenchley,
- Michel Dione,
- Martin Antonio,
- Gary P. Schroth,
- Jay R. Kaplan,
- Matthew J. Jorgensen,
- Gregg W.C. Thomas,
- Matthew W. Hahn,
- Brian J. Raney,
- Bronwen Aken,
- Rishi Nag,
- Juergen Schmitz,
- Gennady Churakov,
- Angela Noll,
- Roscoe Stanyon,
- David Webb,
- Francoise Thibaud-Nissen,
- Magnus Nordborg,
- Tomas Marques-Bonet,
- Ken Dewar,
- George M. Weinstock,
- Richard K. Wilson,
- and Nelson B. Freimer
Genome Res. December 2015 25: 1921-1933; Published in Advance September 16, 2015, doi:10.1101/gr.192922.115
...the central BAC RP11-435K10 shows a splitting signal. Moreover, a single rhesus macaque BAC that mapped to separate vervet chromosomes (Supplemental Fig. S3) provided a higher resolution example of a fission that seeded a centromere on CAE24 and a telomere on CAE29. Analysis of synteny to a 284-kb region...
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Method: Genome-wide characterization of centromeric satellites from multiple mammalian genomes
- Can Alkan,
- Maria Francesca Cardone,
- Claudia Rita Catacchio,
- Francesca Antonacci,
- Stephen J. O'Brien,
- Oliver A. Ryder,
- Stefania Purgato,
- Monica Zoli,
- Giuliano Della Valle,
- Evan E. Eichler,
- and Mario Ventura
Genome Res. January 2011 21: 137-145; Published in Advance November 16, 2010, doi:10.1101/gr.111278.110
...in this case. Wemodified our approach to discover CFA centromeric sequences. While centromeric DNA spans 3–5 Mb, the typical higher-order repeat unit (343–1197 bp) is sufficiently small enough that it can be traversed by a plasmid. RepeatNet takes this into account during its search for WGS clone mapping...
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Research: Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee
- Mario Ventura,
- Claudia R. Catacchio,
- Can Alkan,
- Tomas Marques-Bonet,
- Saba Sajjadian,
- Tina A. Graves,
- Fereydoun Hormozdiari,
- Arcadi Navarro,
- Maika Malig,
- Carl Baker,
- Choli Lee,
- Emily H. Turner,
- Lin Chen,
- Jeffrey M. Kidd,
- Nicoletta Archidiacono,
- Jay Shendure,
- Richard K. Wilson,
- and Evan E. Eichler
Genome Res. October 2011 21: 1640-1649; Published in Advance June 17, 2011, doi:10.1101/gr.124461.111
...M,Mudge JM, Palumbo V, Burn S, Blennow E, Pierluigi M, Giorda R, Zuffardi O, Archidiacono N, Jackson MS, et al. 2003. Neocentromeres in 15q24-26 map to duplicons which flanked an ancestral centromere in 15q25. Genome Res 13: 2059–2068. VenturaM,Weigl S, Carbone L...

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