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Research: Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo
- Katharine N. Schulz,
- Eliana R. Bondra,
- Arbel Moshe,
- Jacqueline E. Villalta,
- Jason D. Lieb,
- Tommy Kaplan,
- Daniel J. McKay,
- and Melissa M. Harrison
Genome Res. November 2015 25: 1715-1726; Published in Advance September 2, 2015, doi:10.1101/gr.192682.115
...is not without precedent. It has recently been demonstrated that homologs of the core pluripotency factors, Nanog, Pou5f3 (previously known as Pou5f1 and Oct4), and Sox19B (a member of the SoxB1 family), act analogously to Zld during the zebrafish MZT to drive activation (Lee et al. 2013; Leichsenring et al...
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Method: Antibody-free profiling of transcription factor occupancy during early embryogenesis by FitCUT&RUN
- Xiangxiu Wang,
- Wen Wang,
- Yiman Wang,
- Jia Chen,
- Guifen Liu,
- and Yong Zhang
Genome Res. February 2022 32: 378-388; Published in Advance December 29, 2021, doi:10.1101/gr.275837.121
...of accessible chromatin at their binding sites (Liu et al. 2018; Veil et al. 2019; Pálfy et al. 2020), and we indeed observed significantly decreased ATAC-seq signals at the binding sites after corresponding knockout (KO) of nanog, pou5f3, or sox19b (Fig. 3B; Supplemental Fig. S4E,F). Taken together, the data...

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