Searching journal content for articles similar to Vaisvila et al. 31 (7): 1280.

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  1. Mini-Review: Evolution of genome-wide methylation profiling technologies
    • Carolina Montano and
    • Winston Timp
    Genome Res. April 2025 35: 572-582; doi:10.1101/gr.278407.123
    ...or immunoprecipitation to separate methylated and unmethylated DNA. (B) Bisulfite treatment converts unmethylated cytosine to uracil, allowing differentiation between methylated and unmethylated DNA that can be assayed using microarrays or short-read sequencing. (C) Newer enzymatic methods use a series of proteins...
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  2. Method: Simultaneous assessment of human genome and methylome data in a single experiment using limited deamination of methylated cytosine
    • Bo Yan,
    • Duan Wang,
    • and Laurence Ettwiller
    Genome Res. June 2024 34: 904-913; Published in Advance June 10, 2024, doi:10.1101/gr.278294.123
    ....117 ↵Vaisvila R, Ponnaluri VKC, Sun Z, Langhorst BW, Saleh L, Guan S, Dai N, Campbell MA, Sexton BS, Marks K, et al. 2021. Enzymatic methyl sequencing detects DNA methylation at single-base resolution from picograms of DNA. Genome Res 31: 1280–1289. doi:10.1101/gr.266551.120 ↵Vrba L, Futscher BW. 2018. A suite...
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  3. Research: APOBEC3A drives deaminase mutagenesis in human gastric epithelium
    • Yohan An,
    • Ji-Hyun Lee,
    • Joonoh Lim,
    • Jeonghwan Youk,
    • Seongyeol Park,
    • Ji-Hyung Park,
    • Kijong Yi,
    • Taewoo Kim,
    • Chang Hyun Nam,
    • Won Hee Lee,
    • Soo A Oh,
    • Yoo Jin Bae,
    • Thomas M. Klompstra,
    • Haeun Lee,
    • Jinju Han,
    • Junehwak Lee,
    • Jung Woo Park,
    • Jie-Hyun Kim,
    • Hyunki Kim,
    • Hugo Snippert,
    • Bon-Kyoung Koo,
    • and Young Seok Ju
    Genome Res. October 2025 35: 2158-2172; Published in Advance August 26, 2025, doi:10.1101/gr.280338.124
    ...-associated single base substitutions in DNA and RNA. (A) Mutational burden of SNVs following APOBEC overexpression (A3A or A3B), measured by whole- sequencing of the clones and duplex DNA sequencing. The number of SNVs measured by the duplex DNA sequencing was normalized per diploid ; (left) hGOiA3A lines...
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