Searching journal content for articles similar to Tyson et al. 28 (2): 266.

Displaying results 1-4 of 4
For checked items
  1. Resource: CGC1, a new reference genome for Caenorhabditis elegans
    • Kazuki Ichikawa,
    • Massa J. Shoura,
    • Karen L. Artiles,
    • Dae-Eun Jeong,
    • Chie Owa,
    • Haruka Kobayashi,
    • Yoshihiko Suzuki,
    • Manami Kanamori,
    • Yu Toyoshima,
    • Yuichi Iino,
    • Ann E. Rougvie,
    • Lamia Wahba,
    • Andrew Z. Fire,
    • Erich M. Schwarz,
    • and Shinichi Morishita
    Genome Res. August 2025 35: 1902-1918; Published in Advance July 15, 2025, doi:10.1101/gr.280274.124
    ...derivative of the N2 strain. We use improved long-read sequencing and manual assembly of 43 recalcitrant genomic regions to overcome deficiencies of prior N2 and VC2010 assemblies and to assemble tandem repeat loci, including a 772 kb sequence for the 45S rRNA genes. Although many differences from earlier...
    OPEN ACCESS ARTICLE
  2. Resource: Recompleting the Caenorhabditis elegans genome
    • Jun Yoshimura,
    • Kazuki Ichikawa,
    • Massa J. Shoura,
    • Karen L. Artiles,
    • Idan Gabdank,
    • Lamia Wahba,
    • Cheryl L. Smith,
    • Mark L. Edgley,
    • Ann E. Rougvie,
    • Andrew Z. Fire,
    • Shinichi Morishita,
    • and Erich M. Schwarz
    Genome Res. June 2019 29: 1009-1022; Published in Advance May 23, 2019, doi:10.1101/gr.244830.118
    ...), it used sequence data from several laboratories, with DNA propagated in bacteria and yeast. Thus, the N2 assembly has many differences from any C. elegans available today. To provide a more accurate C. elegans , we performed long-read assembly of VC2010, a modern strain derived from N2. Our VC2010...
    OPEN ACCESS ARTICLE
  3. Resource: Long-read sequencing reveals intra-species tolerance of substantial structural variations and new subtelomere formation in C. elegans
    • Chuna Kim,
    • Jun Kim,
    • Sunghyun Kim,
    • Daniel E. Cook,
    • Kathryn S. Evans,
    • Erik C. Andersen,
    • and Junho Lee
    Genome Res. June 2019 29: 1023-1035; Published in Advance May 23, 2019, doi:10.1101/gr.246082.118
    ...These authors contributed equally to this work. Corresponding author: elegans@snu.ac.krAbstractLong-read sequencing technologies have contributed greatly to comparative genomics among species and can also be applied to study genomics within a species. In this study, to determine how substantial genomic changes...
    OPEN ACCESS ARTICLE
  4. Method: Accurate bacterial outbreak tracing with Oxford Nanopore sequencing and reduction of methylation-induced errors
    • Mara Lohde,
    • Gabriel E. Wagner,
    • Johanna Dabernig-Heinz,
    • Adrian Viehweger,
    • Sascha D. Braun,
    • Stefan Monecke,
    • Celia Diezel,
    • Claudia Stein,
    • Mike Marquet,
    • Ralf Ehricht,
    • Mathias W. Pletz,
    • and Christian Brandt
    Genome Res. November 2024 34: 2039-2047; Published in Advance October 23, 2024, doi:10.1101/gr.278848.123
    ...multiple types of DNA methylation from bacteria and microbiome using nanopore sequencing. Nat Methods 18: 491–498. doi:10.1038/s41592-021-01109-3 ↵Tyson JR, O'Neil NJ, Jain M, Olsen HE, Hieter H, Snutch TP. 2018. MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference...
    OPEN ACCESS ARTICLE
For checked items

Search Results

New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research