Searching journal content for articles similar to Tuzun et al. 14 (4): 493.

Displaying results 1-10 of 34

For checked items

view abstracts
download to citation manager

Select this article
LETTER: A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications
- Xinwei She,
- Ge Liu,
- Mario Ventura,
- Shaying Zhao,
- Doriana Misceo,
- Roberta Roberto,
- Maria Francesca Cardone,
- Mariano Rocchi,
- NISC Comparative Sequencing Program,
- Eric D. Green,
- Nicoletta Archidiacano,
- and Evan E. Eichler
Genome Res. May 2006 16: 576-583; Published in Advance April 10, 2006, doi:10.1101/gr.4949406
...evolution result in complex human architecture. Genome Res. 14 : 2209 – 2220 . ↵ Tuzun E. , Bailey J.A. , Eichler E.E. ( 2004 ) Recent segmental duplications in the working draft assembly of the brown Norway rat. Genome Res. 14 : 493 – 506 . ↵ Tuzun E. , Sharp A.J. , Bailey J.A. , Kaul R. , Morrison V...
Select this article
Resource: The genomic architecture of segmental duplications and associated copy number variants in dogs
- Thomas J. Nicholas,
- Ze Cheng,
- Mario Ventura,
- Katrina Mealey,
- Evan E. Eichler,
- and Joshua M. Akey
Genome Res. March 2009 19: 491-499; Published in Advance January 7, 2009, doi:10.1101/gr.084715.108
...3 , doi: 10.1371/journal.pgen.0030003 . ↵ Guryev, V. , Saar, K. , Adamovic, T. , Verheul, M. , van Heesch, S.A. , Cook, S. , Pravenec, M. , Aitman, T. , Jacob, H. , Shull, J.D. , et al. ( 2008 ) Distribution and functional impact of DNA copy number variation in the rat . Nat. Genet. 40 : 538 – 545...
Select this article
ARTICLE: Analysis of Segmental Duplications and Genome Assembly in the Mouse
- Jeffrey A. Bailey,
- Deanna M. Church,
- Mario Ventura,
- Mariano Rocchi,
- and Evan E. Eichler
Genome Res. May 2004 14: 789-801; doi:10.1101/gr.2238404
.... The working draft nature of the mouse , we believe, precludes such a precise estimate. Our combined analyses, however, suggest a range from 1.7% to 2.0% (for duplications ≥90% and ≥10 kb). This estimate is lower than what has recently been predicted for the rat (2.9%; Tuzun et al. 2004 ). The percentage...
Select this article
LETTER: A model of segmental duplication formation in Drosophila melanogaster
- Anna-Sophie Fiston-Lavier,
- Dominique Anxolabehere,
- and Hadi Quesneville
Genome Res. October 2007 17: 1458-1470; Published in Advance August 28, 2007, doi:10.1101/gr.6208307
...( Waterston et al. 2002 ), 2.92% for the 2.75 Gb of the Brown Norway rat ( Rattus norvegicus, v. 3.1) ( Rew 2004 ), and 5% for the 3 Gb of the human ( Bailey et al. 2001 , 2002 ; Lander et al. 2001 ; Venter et al. 2001 ). According to HR models, genomic features such as size and density in repeated sequences...
OPEN ACCESS ARTICLE
Select this article
Research: The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance
- Santosh S. Atanur,
- İnanç Birol,
- Victor Guryev,
- Martin Hirst,
- Oliver Hummel,
- Catherine Morrissey,
- Jacques Behmoaras,
- Xose M. Fernandez-Suarez,
- Michelle D. Johnson,
- William M. McLaren,
- Giannino Patone,
- Enrico Petretto,
- Charles Plessy,
- Kathleen S. Rockland,
- Charles Rockland,
- Kathrin Saar,
- Yongjun Zhao,
- Piero Carninci,
- Paul Flicek,
- Ted Kurtz,
- Edwin Cuppen,
- Michal Pravenec,
- Norbert Hubner,
- Steven J.M. Jones,
- Ewan Birney,
- and Timothy J. Aitman
Genome Res. June 2010 20: 791-803; Published in Advance April 29, 2010, doi:10.1101/gr.103499.109
...platform. We identified 3.6 million high-quality single nucleotide polymorphisms (SNPs) between the SHR/OlaIpcv and Brown Norway (BN) reference genome, with a high rate of validation (sensitivity 96.3%–98.0% and specificity 99%–100%). We also identified 343,243 short indels between the SHR...
Select this article
Methods: Mapping segmental and sequence variations among laboratory mice using BAC array CGH
- Antoine M. Snijders,
- Norma J. Nowak,
- Bing Huey,
- Jane Fridlyand,
- Sindy Law,
- Jeffrey Conroy,
- Taku Tokuyasu,
- Kubilay Demir,
- Readman Chiu,
- Jian-Hua Mao,
- Ajay N. Jain,
- Steven J.M. Jones,
- Allan Balmain,
- Daniel Pinkel,
- and Donna G. Albertson
Genome Res. February 2005 15: 302-311; doi:10.1101/gr.2902505
...proportions of rodent s, 2.92% in the rat ( Tuzun et al. 2004 ) and 1%-1.2% in the mouse ( Cheung et al. 2003 ). These studies have found that both intrachromosomal and interchromosomal or transchromosomal segmental duplications are mosaics of sequences duplicated from within one chromosome or nonhomologous...
Select this article
RESOURCE: Integration of the Rat Recombination and EST Maps in the Rat Genomic Sequence and Comparative Mapping Analysis With the Mouse Genome
- Steven P. Wilder,
- Marie-Thérèse Bihoreau,
- Karène Argoud,
- Takeshi K. Watanabe,
- Mark Lathrop,
- and Dominique Gauguier
Genome Res. April 2004 14: 758-765; doi:10.1101/gr.2001604
.... Genetic Mapping of New Microsatellite Loci A single large intercross derived from the Goto-Kakizaki (GK) and Brown Norway (BN) rats (n=139) was used to integrate new DnGot microsatellite markers showing allele variations between the two parental strains into existing linkage maps (Gauguier et al. 1996...
Select this article
RESOURCE: High-Density Rat Radiation Hybrid Maps Containing Over 24,000 SSLPs, Genes, and ESTs Provide a Direct Link to the Rat Genome Sequence
- Anne E. Kwitek,
- Jo Gullings-Handley,
- Jiaming Yu,
- Danilo C. Carlos,
- Kimberly Orlebeke,
- Jeff Nie,
- Jeffrey Eckert,
- Angela Lemke,
- Jaime Wendt Andrae,
- Susan Bromberg,
- Dean Pasko,
- Dan Chen,
- Todd E. Scheetz,
- Thomas L. Casavant,
- M. Bento Soares,
- Val C. Sheffield,
- Peter J. Tonellato,
- and Howard J. Jacob
Genome Res. April 2004 14: 750-757; doi:10.1101/gr.1968704
...of a blood pressure QTL on chromosome 16 of Dahl rats. Mamm. Genome 13 : 153 -156. ↵ Rat Genome Sequencing Project Consortium. 2004 . Genome sequence of the Brown Norway Rat yields insights into mammalian evolution. Nature (in press). ↵ Rodriguez-Tome, P. and Lijnzaad, P. 2001 . RHdb: The Radiation Hybrid...
Select this article
Methods: Dynamic Building of a BAC Clone Tiling Path for the Rat Genome Sequencing Project
- Rui Chen,
- Erica Sodergren,
- George M. Weinstock,
- and Richard A. Gibbs
Genome Res. April 2004 14: 679-684; doi:10.1101/gr.2171704
...., Horsnell, T., and Coulson, A. 1988 . Software for mapping by fingerprinting techniques. Comput. Appl. Biosci. 4 : 125 -132. ↵ Tuzun, E., Bailey, J.A., and Eichler, E.E. 2004 . Recent segmental duplications in the working draft assembly of the brown Norway rat. Genome Res. (this issue). ↵ Waterston, R...
Select this article
LETTER: The Genomic Sequence and Comparative Analysis of the Rat Major Histocompatibility Complex
- Peter Hurt,
- Lutz Walter,
- Ralf Sudbrak,
- Sven Klages,
- Ines Müller,
- Takashi Shiina,
- Hidetoshi Inoko,
- Hans Lehrach,
- Eberhard Günther,
- Richard Reinhardt,
- and Heinz Himmelbauer
Genome Res. April 2004 14: 631-639; doi:10.1101/gr.1987704
...) draft sequence (haplotype b; NT_039650). RT1 vs. HLA, comparison of 3.8-Mb RT1 sequence to HLA (NT007592; segment 20-25 Mb). Class I α1- and α3-domain homologies were identified by rat RT1-Au gene exons 2 and 4, respectively (from U38972). Analysis was performed using PipMaker. Colors within “heat map...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Tuzun et al. 14 (4): 493.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: