Searching journal content for articles similar to Tuller et al. 20 (1): 122.

Displaying results 1-10 of 53

For checked items

view abstracts
download to citation manager

Select this article
Research: Timescale and genetic linkage explain the variable impact of defense systems on horizontal gene transfer
- Yang Liu,
- João Botelho,
- and Jaime Iranzo
Genome Res. February 2025 35: 268-278; Published in Advance January 10, 2025, doi:10.1101/gr.279300.124
...the phylogenomic reconstruction tool GLOOME. We quantified the relative differences in gene gain and loss by dividing the rates observed in DEF+ clades by those from sister DEF− clades. Finally, we compared the resulting DEF+/DEF− gain and loss ratios between species in which MGE abundances and defense systems...
OPEN ACCESS ARTICLE
Select this article
Research: MHC in newts illuminates the evolutionary dynamics of complex regions in giant genomes
- Wiesław Babik,
- Katarzyna Dudek,
- Gemma Palomar,
- Marzena Marszałek,
- Grzegorz Dubin,
- Maximina H. Yun,
- and Magdalena Migalska
Genome Res. February 2026 36: 303-317; Published in Advance January 12, 2026, doi:10.1101/gr.281127.125
...that provide multiple MHC-Ia molecules with broadly compatible, “average-best fit” peptides. However, the ancestral, tight linkage between MHC-Ia genes and their associated APGs, seen in noneutherian tetrapods, has been proposed to promote coevolution, while simultaneously constraining the expansion of MHC...
Select this article
Research: Pangenome analysis reveals families of ubiquitin-ligase adaptors as key genomic divergence drivers that lead to hybrid incompatibility
- Dongying Xie,
- Pohao Ye,
- Yiming Ma,
- and Zhongying Zhao
Genome Res. March 2026 36: 506-521; Published in Advance February 17, 2026, doi:10.1101/gr.280885.125
..., are highlighted. (D) Gene family expansion and contraction analysis across five Caenorhabditis nematodes. The predicted number of expanded (red) and contracted (green) gene families are indicated for each species as well as the ancestral node. (Cre) C. remanei; (Cbn) C. brenneri; (Cel) C. elegans. (E) Predicted...
Select this article
Research: Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways
- Blair W. Perry,
- Siddharth S. Gopalan,
- Giulia I.M. Pasquesi,
- Drew R. Schield,
- Aundrea K. Westfall,
- Cara F. Smith,
- Ivan Koludarov,
- Paul T. Chippindale,
- Mark W. Pellegrino,
- Edward B. Chuong,
- Stephen P. Mackessy,
- and Todd A. Castoe
Genome Res. June 2022 32: 1058-1073; Published in Advance June 1, 2022, doi:10.1101/gr.276251.121
..., we use functional genomics approaches to investigate venom regulatory architecture in the prairie rattlesnake and identify cis-regulatory sequences (enhancers and promoters), trans-regulatory transcription factors, and integrated signaling cascades involved in the regulation of snake venom genes. We...
OPEN ACCESS ARTICLE
Select this article
LETTER: Coevolution of gene families in prokaryotes
- Otto X. Cordero,
- Berend Snel,
- and Paulien Hogeweg
Genome Res. March 2008 18: 462-468; Published in Advance January 29, 2008, doi:10.1101/gr.6815508
...on a tree of life based on a large-scale ancestral gene content reconstruction, which includes gene duplication and deletion events. The insights obtained from this study are threefold: (1) Global properties, such as the distribution of coevolution partners and the formation of disconnected clusters...
Select this article
Resource: High-quality assembly of the Chinese white truffle genome and recalibrated divergence time estimate provide insight into the evolutionary dynamics of Tuberaceae
- Jacopo Martelossi,
- Jacopo Vujovic,
- Yue Huang,
- Alessia Tatti,
- Kaiwei Xu,
- Federico Puliga,
- Yuanxue Chen,
- Omar Rota Stabelli,
- Fabrizio Ghiselli,
- Xiaoping Zhang,
- and Alessandra Zambonelli
Genome Res. November 2025 35: 2601-2616; Published in Advance August 21, 2025, doi:10.1101/gr.280368.124
...-existing Chromoviridae-related Gypsy clades independently expanded in different truffle lineages, leading to increased size and high gene-family turnover rates, but without resulting in highly rearranged s. Additionally, we uncover a significant enrichment of ECM-induced gene families stemming from ancestral duplication...
Select this article
Research: The genomic basis of evolutionary differentiation among honey bees
- Bertrand Fouks,
- Philipp Brand,
- Hung N. Nguyen,
- Jacob Herman,
- Francisco Camara,
- Daniel Ence,
- Darren E. Hagen,
- Katharina J. Hoff,
- Stefanie Nachweide,
- Lars Romoth,
- Kimberly K.O. Walden,
- Roderic Guigo,
- Mario Stanke,
- Giuseppe Narzisi,
- Mark Yandell,
- Hugh M. Robertson,
- Nikolaus Koeniger,
- Panuwan Chantawannakul,
- Michael C. Schatz,
- Kim C. Worley,
- Gene E. Robinson,
- Christine G. Elsik,
- and Olav Rueppell
Genome Res. July 2021 31: 1203-1215; Published in Advance May 4, 2021, doi:10.1101/gr.272310.120
...in glucose metabolism, and (5) one additional orthogroup of unknown function were positively selected in both the Apis branch and A. mellifera. In the three species branches, as well as the ancestral Apis branch, several positively selected genes were identified with a function in the regulation of gene...
OPEN ACCESS ARTICLE
Select this article
Research: Hierarchical architecture of neo-sex chromosomes and accelerated adaptive evolution in tortricid moths
- Fangyuan Yang,
- Li-Jun Cao,
- Petr Nguyen,
- Zhong-Zheng Ma,
- Jin-Cui Chen,
- Wei Song,
- and Shu-Jun Wei
Genome Res. January 2025 35: 66-77; Published in Advance January 6, 2025, doi:10.1101/gr.279569.124
...genes should be compensated in female tortricids. We analyzed the gene expression in G. molesta per individual elements of F(20 + 17,Z) and found that, in both sexes, MZ maintained half of the ancestral autosomal average as represented by the outgroup S. bembeciformis, which represents the ancestral...
Select this article
12 Drosophila Genomes/Letter: Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase
- Alfredo Villasante,
- José P. Abad,
- Rosario Planelló,
- María Méndez-Lago,
- Susan E. Celniker,
- and Beatriz de Pablos
Genome Res. December 2007 17: 1909-1918; Published in Advance November 7, 2007, doi:10.1101/gr.6365107
...Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase Alfredo Villasante 1 , 4 , José P. Abad 1 , Rosario Planelló 1 , 3 , María Méndez-Lago 1 , Susan E. Celniker 2...
OPEN ACCESS ARTICLE
Select this article
Research: Comparative genomics of Cryptosporidium parvum reveals the emergence of an outbreak-associated population in Europe and its spread to the United States
- Greta Bellinzona,
- Tiago Nardi,
- Michele Castelli,
- Gherard Batisti Biffignandi,
- Karim Adjou,
- Martha Betson,
- Yannick Blanchard,
- Ioana Bujila,
- Rachel Chalmers,
- Rebecca Davidson,
- Nicoletta D'Avino,
- Tuulia Enbom,
- Jacinto Gomes,
- Gregory Karadjian,
- Christian Klotz,
- Emma Östlund,
- Judith Plutzer,
- Ruska Rimhanen-Finne,
- Guy Robinson,
- Anna Rosa Sannella,
- Jacek Sroka,
- Christen Rune Stensvold,
- Karin Troell,
- Paolo Vatta,
- Barbora Zalewska,
- Claudio Bandi,
- Davide Sassera,
- and Simone M. Cacciò
Genome Res. June 2024 34: 877-887; Published in Advance July 8, 2024, doi:10.1101/gr.278830.123
...in LD in population 3 compared with population 2 (Fig. 3).Our reconstructions indicate that population 2, which includes both IIa and IId groups, is ancestral in Europe. Considering the relatively limited admixture herein evidenced with non-European isolates (Fig. 1), we hypothesize that the coexistence...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Tuller et al. 20 (1): 122.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: