Searching journal content for articles similar to Tsuchiya et al. 14 (7): 1275.

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  1. Research: Global survey of escape from X inactivation by RNA-sequencing in mouse
    • Fan Yang,
    • Tomas Babak,
    • Jay Shendure,
    • and Christine M. Disteche
    Genome Res. May 2010 20: 614-622; Published in Advance April 2, 2010, doi:10.1101/gr.103200.109
    ...S2, S3). Eight of 11 genes that we found to escape X inactivation in mouse also escape in human (i.e., are expressed from at least one out of nine hybrids that retain the human inactive X) (Carrel and Willard 2005), suggesting that escape from X inactivation is partially conserved (Table 1...
  2. Letter: Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28
    • Margaret L. Delbridge,
    • Hardip R. Patel,
    • Paul D. Waters,
    • Daniel A. McMillan,
    • and Jennifer A. Marshall Graves
    Genome Res. August 2009 19: 1350-1360; Published in Advance May 13, 2009, doi:10.1101/gr.088625.108
    ...–HUWE1 region close to the end of the X chromosome in two marsupials led us to investigate whether the entire end of the marsupial X was conserved. Examination of the Ensembl v50 (July 2008) opossum assembly showed that the 2Mb region (71.6–73.6 Mb) with orthology to human Xp11, including the GPR173...
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  3. Research: DNA methylation profiles of human active and inactive X chromosomes
    • Andrew J. Sharp,
    • Elisavet Stathaki,
    • Eugenia Migliavacca,
    • Manisha Brahmachary,
    • Stephen B. Montgomery,
    • Yann Dupre,
    • and Stylianos E. Antonarakis
    Genome Res. October 2011 21: 1592-1600; Published in Advance August 23, 2011, doi:10.1101/gr.112680.110
    ...19: 185–193. Brown CJ, Miller AP, Carrel L, Rupert JL, Davies KE, Willard HF. 1995. The DXS423E gene in Xp11.21 escapes X chromosome inactivation. Hum Mol Genet 4: 251–255. Carrel L, Willard HF. 2005. X-inactivation profile reveals extensive variability in X-linked gene expression in females...
  4. Research: Clcn4-2 genomic structure differs between the X locus in Mus spretus and the autosomal locus in Mus musculus: AT motif enrichment on the X
    • Di Kim Nguyen,
    • Fan Yang,
    • Rajinder Kaul,
    • Can Alkan,
    • Anthony Antonellis,
    • Karen F. Friery,
    • Baoli Zhu,
    • Pieter J. de Jong,
    • and Christine M. Disteche
    Genome Res. March 2011 21: 402-409; Published in Advance January 31, 2011, doi:10.1101/gr.108563.110
    ...studies. Nat Rev Genet 8: 424–436. Takai D, Jones PA. 2003. The CpG island searcher: A new WWW resource. In Silico Biol 3: 235–240. Tsuchiya KD, Greally JM, Yi Y, Noel KP, Truong JP, Disteche CM. 2004. Comparative sequence and x-inactivation analyses of a domain of escape in human Xp11.2 and the conserved...
  5. LETTER: Inverted Repeat Structure of the Human Genome: The X-Chromosome Contains a Preponderance of Large, Highly Homologous Inverted Repeats That Contain Testes Genes
    • Peter E. Warburton,
    • Joti Giordano,
    • Fanny Cheung,
    • Yefgeniy Gelfand,
    • and Gary Benson
    Genome Res. October 2004 14: 1861-1869; doi:10.1101/gr.2542904
    ...a preponderance of large IRs that contain testes genes. However, the analysis must be revisited as the mouse sequence and assembly are improved. IRF analyses of the current and future assemblies of mouse will be included in the IRDB. Analysis of IR Structure in Human Chromosome Xp11.22 Similarity dot...
  6. Resource: Phenotypic annotation of the mouse X chromosome
    • Brian J. Cox,
    • Marion Vollmer,
    • Owen Tamplin,
    • Mei Lu,
    • Steffen Biechele,
    • Marina Gertsenstein,
    • Claude van Campenhout,
    • Thomas Floss,
    • Ralf Kühn,
    • Wolfgang Wurst,
    • Heiko Lickert,
    • and Janet Rossant
    Genome Res. August 2010 20: 1154-1164; Published in Advance June 14, 2010, doi:10.1101/gr.105106.110
    ...embryos (cf. Fig. 4D and J, stars). KDM6A has been identified as a histone H3 K27 demethylase involved in epigenetic regulation of gene expression (Lee et al. 2007).Kdm6a also escapes X inactivation in both themouse and human (Greenfield et al. 1998). Expression of Ccdc160 in mutant embryos was first...
  7. LETTER: Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas
    • Neerja Karnani,
    • Christopher Taylor,
    • Ankit Malhotra,
    • and Anindya Dutta
    Genome Res. June 2007 17: 865-876; doi:10.1101/gr.5427007
    ...that the replication domains correspond to chromosomal domains separated by boundary elements. Results Replication timing analyses of 1% using synchronized HeLa cells HeLa cells were synchronized at G1/S by thymidine-aphidicolin block. After release from the block, cells were pulsed with bromodeoxyuridine (Brd...
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