Searching journal content for articles similar to Tsankov et al. 21 (11): 1851.

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  1. Research: Nucleosomal signatures impose nucleosome positioning in coding and noncoding sequences in the genome
    • Sara González,
    • Alicia García,
    • Enrique Vázquez,
    • Rebeca Serrano,
    • Mar Sánchez,
    • Luis Quintales,
    • and Francisco Antequera
    Genome Res. November 2016 26: 1532-1543; Published in Advance September 23, 2016, doi:10.1101/gr.207241.116
    ...well-defined and stable positions. While the contribution of chromatin remodelers and DNA binding proteins to maintain this organization is well established, the relevance of the DNA sequence to nucleosome positioning in the remains controversial. Through quantitative analysis of nucleosome positioning...
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  2. Method: Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
    • Alicia N. Schep,
    • Jason D. Buenrostro,
    • Sarah K. Denny,
    • Katja Schwartz,
    • Gavin Sherlock,
    • and William J. Greenleaf
    Genome Res. November 2015 25: 1757-1770; Published in Advance August 27, 2015, doi:10.1101/gr.192294.115
    ...through MNase digestion of chromatin followed by high-throughput sequencing of protected fragments have provided a window into the relationship between TF binding and nucleosome positioning, revealing that certain TFs are consistently flanked by well-positioned nucleosomes, while others show considerable...
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  3. Research: CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
    • Romain Fenouil,
    • Pierre Cauchy,
    • Frederic Koch,
    • Nicolas Descostes,
    • Joaquin Zacarias Cabeza,
    • Charlène Innocenti,
    • Pierre Ferrier,
    • Salvatore Spicuglia,
    • Marta Gut,
    • Ivo Gut,
    • and Jean-Christophe Andrau
    Genome Res. December 2012 22: 2399-2408; Published in Advance October 25, 2012, doi:10.1101/gr.138776.112
    ..., Yanagisawa Y, Rhind N, Regev A, Rando OJ. 2011. Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization. Genome Res 21: 1851–1862. Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. 2011. Determinants of nucleosome...
  4. Method: Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements
    • Anshul Kundaje,
    • Sofia Kyriazopoulou-Panagiotopoulou,
    • Max Libbrecht,
    • Cheryl L. Smith,
    • Debasish Raha,
    • Elliott E. Winters,
    • Steven M. Johnson,
    • Michael Snyder,
    • Serafim Batzoglou,
    • and Arend Sidow
    Genome Res. September 2012 22: 1735-1747; doi:10.1101/gr.136366.111
    ..., nucleosome positioning, and sequence content. Meta-analyses of the signal profiles revealed a common vocabulary of chromatin signals shared across multiple cell lines and binding proteins. Footnotes ↵ 7 Corresponding authors E-mail akundaje@stanford.edu E-mail serafim@cs.stanford.edu E...
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