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LETTER: Construction of a High-Resolution 2.5-Mb Transcript Map of the Human 6p21.2–6p21.3 Region Immediately Centromeric of the Major Histocompatibility Complex
- Nicos Tripodis,
- Sophie Palmer,
- Sam Phillips,
- Sarah Milne,
- Stephan Beck,
- and Jiannis Ragoussis
Genome Res. April 1, 2000 10: 454-472; doi:10.1101/gr.10.4.454
...Construction of a High-Resolution 2.5-Mb Transcript Map of the Human 6p21.2–6p21.3 Region Immediately Centromeric of the Major Histocompatibility Complex Nicos Tripodis 1 , 3 , Sophie Palmer 2 , Sam Phillips 2 , Sarah Milne 2 , Stephan Beck 2...
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LETTER: Reconfiguration of genomic anchors upon transcriptional activation of the human major histocompatibility complex
- Diego Ottaviani,
- Elliott Lever,
- Richard Mitter,
- Tania Jones,
- Tim Forshew,
- Rossitza Christova,
- Eleni M. Tomazou,
- Vardhman K. Rakyan,
- Stephen A. Krawetz,
- Adrian E. Platts,
- Badmavady Segarane,
- Stephan Beck,
- and Denise Sheer
Genome Res. November 2008 18: 1778-1786; Published in Advance October 10, 2008, doi:10.1101/gr.082313.108
...that they can bring together proximal and distal cis -regulatory elements at the nuclear matrix and shield chromatin domains from the effects of flanking regulatory regions ( Nabirochkin et al. 1998 ; Eivazova et al. 2007 ; Girod et al. 2007 ). The mapping of MARs directly to or in the vicinity of several...
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LETTER: Genetic Divergence of the Rhesus Macaque Major Histocompatibility Complex
- Riza Daza-Vamenta,
- Gustavo Glusman,
- Lee Rowen,
- Brandon Guthrie,
- and Daniel E. Geraghty
Genome Res. August 2004 14: 1501-1515; doi:10.1101/gr.2134504
...) to generate macaque probes for screening the BAC resource ( Geraghty et al. 2002 ). Using this strategy, it was possible to map clones for sequencing and to assign each BAC to one of the two haplotypes represented in the library. Subsequent clone isolations required the use of sequence data from the ends...
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LETTER: The Genomic Sequence and Comparative Analysis of the Rat Major Histocompatibility Complex
- Peter Hurt,
- Lutz Walter,
- Ralf Sudbrak,
- Sven Klages,
- Ines Müller,
- Takashi Shiina,
- Hidetoshi Inoko,
- Hans Lehrach,
- Eberhard Günther,
- Richard Reinhardt,
- and Heinz Himmelbauer
Genome Res. April 2004 14: 631-639; doi:10.1101/gr.1987704
...mapping and evolution of the centromeric class I gene-containing region of the rat MHC. Immunogenetics 51 : 829 -837. ↵ Walter, L., Hurt, P., Himmelbauer, H., Sudbrak, R., and Günther, E. 2002 . Physical mapping of the major histocompatibility complex class II and class III regions of the rat...
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LETTER: Species-Specific Class I Gene Expansions Formed the Telomeric 1 Mb of the Mouse Major Histocompatibility Complex
- Toyoyuki Takada,
- Attila Kumánovics,
- Claire Amadou,
- Masayasu Yoshino,
- Elsy P. Jones,
- Maria Athanasiou,
- Glen A. Evans,
- and Kirsten Fischer Lindahl
Genome Res. April 1, 2003 13: 589-600; doi:10.1101/gr.975303
...a physical map of the H2-M region on Chr 17, based on a contig of bacterial artificial chromosome (BAC) clones from strain 129/SvJ (haplotype bc ; Jones et al. 1999 ). Eight clones that should span the centromeric H2-M region were selected from this BAC contig. In the course of sequencing, it became clear...
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RESOURCE: The Comprehensive Mouse Radiation Hybrid Map Densely Cross-Referenced to the Recombination Map: A Tool to Support the Sequence Assemblies
- Lucy B. Rowe,
- Mary E. Barter,
- Jennifer A. Kelmenson,
- and Janan T. Eppig
Genome Res. January 1, 2003 13: 122-133; Published in Advance December 30, 2002, doi:10.1101/gr.858103
...are inferred if flanking data are concordant. Lines join the two maps where the same framework marker is mapped in both systems. These lines are dashed when the marker is mapped only in the 94 animals of the BSS cross due to failure of the Mus spretus allele to amplify from heterozygotes. Open boxes over...
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ARTICLE: An integrated map of human chromosome 6p23.
- M G Olavesen,
- A F Davies,
- S J Broxholme,
- J L Wixon,
- G Senger,
- D Nizetic,
- R D Campbell,
- and J Ragoussis
Genome Res. November 1995 5: 342-358; doi:10.1101/gr.5.4.342
...of approximately 100 clones spanning the entire 6p23 band from 6p22.3 to 6p24.1 and covering 7.5-8.5 Mb of DNA. The YAC contig contains 55 markers including genetically mapped STSs, physically mapped STSs, anonymous STSs, anonymous ESTs, and ESTs from the genes mapped to the region. The order of the genetically...
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LETTER: A Primary Male Autosomal Linkage Map of the Horse Genome
- Gabriella Lindgren,
- Kaj Sandberg,
- Helena Persson,
- Stefan Marklund,
- Matthew Breen,
- Björn Sandgren,
- Johan Carlstén,
- and Hans Ellegren
Genome Res. September 1, 1998 8: 951-966; doi:10.1101/gr.8.9.951
...by the initial construction of maps based on genetic linkage data or physical assignments of markers to chromosomes. Primary or in some cases even second-generation linkage maps are now available for most domestic animal species, for example, cattle ( Barendse et al. 1997 ; Kappes et al. 1997 ), pig ( Marklund...
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RESEARCH: A 1.1-Mb Transcript Map of the Hereditary Hemochromatosis Locus
- David A. Ruddy,
- Gregory S. Kronmal,
- Vincent K. Lee,
- Gabriel A. Mintier,
- Leah Quintana,
- Rodolfo Domingo, Jr.,
- Nicole C. Meyer,
- Alivelu Irrinki,
- Erin E. McClelland,
- Amy Fullan,
- Felipa A. Mapa,
- Theodore Moore,
- Winston Thomas,
- Deborah B. Loeb,
- Cyrus Harmon,
- Zenta Tsuchihashi,
- Roger K. Wolff,
- Randall C. Schatzman,
- and John N. Feder
Genome Res. May 1, 1997 7: 441-456; doi:10.1101/gr.7.5.441
...for these experiments was a 0.9-Mb yeast artificial chromosome (YAC) y899G1 and a 1.1-Mb large-insert bacterial clone contig ( Lauer et al., this issue ). View larger version: In this window In a new window Figure 1. Combination genetic, physical, and transcription map of the HH candidate gene region. The first line...
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ARTICLE: Directed integration of the physical and genetic linkage maps of swine chromosome 7 reveals that the SLA spans the centromere.
- T P Smith,
- G A Rohrer,
- L J Alexander,
- D L Troyer,
- K R Kirby-Dobbels,
- M A Janzen,
- D L Cornwell,
- C F Louis,
- L B Schook,
- and C W Beattie
Genome Res. October 1995 5: 259-271; doi:10.1101/gr.5.3.259
...Directed integration of the physical and genetic linkage maps of swine chromosome 7 reveals that the SLA spans the centromere. T P Smith , G A Rohrer , L J Alexander , D L Troyer , K R Kirby-Dobbels , M A Janzen , D L Cornwell...

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