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Chicken Special/Resources: Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
- Simon J. Hubbard,
- Darren V. Grafham,
- Kevin J. Beattie,
- Ian M. Overton,
- Stuart R. McLaren,
- Michael D.R. Croning,
- Paul E. Boardman,
- James K. Bonfield,
- Joan Burnside,
- Robert M. Davies,
- Elizabeth R. Farrell,
- Matthew D. Francis,
- Sam Griffiths-Jones,
- Sean J. Humphray,
- Christopher Hyland,
- Carol E. Scott,
- Haizhou Tang,
- Ruth G. Taylor,
- Cheryll Tickle,
- William R.A. Brown,
- Ewan Birney,
- Jane Rogers,
- and Stuart A. Wilson
Genome Res. January 2005 15: 174-183; Published in Advance December 8, 2004, doi:10.1101/gr.3011405
...Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags Simon J. Hubbard 1 , Darren V. Grafham 2 , Kevin J. Beattie 3 , Ian M. Overton 1 , Stuart R. McLaren 2 , Michael D...
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LETTER: Annotated Expressed Sequence Tags and cDNA Microarrays for Studies of Brain and Behavior in the Honey Bee
- Charles W. Whitfield,
- Mark R. Band,
- Maria F. Bonaldo,
- Charu G. Kumar,
- Lei Liu,
- Jose R. Pardinas,
- Hugh M. Robertson,
- M. Bento Soares,
- and Gene E. Robinson
Genome Res. April 1, 2002 12: 555-566; doi:10.1101/gr.5302
...Annotated Expressed Sequence Tags and cDNA Microarrays for Studies of Brain and Behavior in the Honey Bee Charles W. Whitfield 1 , Mark R. Band 3 , Maria F. Bonaldo 2 , Charu G. Kumar 3 , Lei Liu 3 , Jose R. Pardinas 3 , Hugh M...
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LETTER: Identification, Characterization, and Mapping of Expressed Sequence Tags from an Embryonic Zebrafish Heart cDNA Library
- Christopher Ton,
- David M. Hwang,
- Adam A. Dempsey,
- Hong-Chang Tang,
- Jennifer Yoon,
- Mindy Lim,
- John D. Mably,
- Mark C. Fishman,
- and Choong-Chin Liew
Genome Res. December 1, 2000 10: 1915-1927; doi:10.1101/gr.154000
...Identification, Characterization, and Mapping of Expressed Sequence Tags from an Embryonic Zebrafish Heart cDNA Library Christopher Ton 1 , David M. Hwang 1 , Adam A. Dempsey 1 , Hong-Chang Tang 1 , Jennifer Yoon 1 , Mindy Lim 1...
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ARTICLE: Generation and analysis of 280,000 human expressed sequence tags.
- L D Hillier,
- G Lennon,
- M Becker,
- M F Bonaldo,
- B Chiapelli,
- S Chissoe,
- N Dietrich,
- T DuBuque,
- A Favello,
- W Gish,
- M Hawkins,
- M Hultman,
- T Kucaba,
- M Lacy,
- M Le,
- N Le,
- E Mardis,
- B Moore,
- M Morris,
- J Parsons,
- C Prange,
- L Rifkin,
- T Rohlfing,
- K Schellenberg,
- and M Marra
Genome Res. September 1996 6: 807-828; doi:10.1101/gr.6.9.807
...Sequencing Center, Washington University School of Medicine, St. Louis, Missouri 63108, USA. lhillier@watson.wustl.edu Abstract We report the generation of 319,311 single-pass sequencing reactions (known as expressed sequence tags, or ESTs) obtained from the 5' and 3' ends of 194,031 human cDNA...
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RESOURCE: Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane
- André L. Vettore,
- Felipe R. da Silva,
- Edson L. Kemper,
- Glaucia M. Souza,
- Aline M. da Silva,
- Maria Inês T. Ferro,
- Flavio Henrique-Silva,
- Éder A. Giglioti,
- Manoel V.F. Lemos,
- Luiz L. Coutinho,
- Marina P. Nobrega,
- Helaine Carrer,
- Suzelei C. França,
- Maurício Bacci, Jr.,
- Maria Helena S. Goldman,
- Suely L. Gomes,
- Luiz R. Nunes,
- Luis E.A. Camargo,
- Walter J. Siqueira,
- Marie-Anne Van Sluys,
- Otavio H. Thiemann,
- Eiko E. Kuramae,
- Roberto V. Santelli,
- Celso L. Marino,
- Maria L.P.N. Targon,
- Jesus A. Ferro,
- Henrique C.S. Silveira,
- Danyelle C. Marini,
- Eliana G.M. Lemos,
- Claudia B. Monteiro-Vitorello,
- José H.M. Tambor,
- Dirce M. Carraro,
- Patrícia G. Roberto,
- Vanderlei G. Martins,
- Gustavo H. Goldman,
- Regina C. de Oliveira,
- Daniela Truffi,
- Carlos A. Colombo,
- Magdalena Rossi,
- Paula G. de Araujo,
- Susana A. Sculaccio,
- Aline Angella,
- Marleide M.A. Lima,
- Vicente E. de Rosa, Jr,
- Fábio Siviero,
- Virginia E. Coscrato,
- Marcos A. Machado,
- Laurent Grivet,
- Sonia M.Z. Di Mauro,
- Francisco G. Nobrega,
- Carlos F.M. Menck,
- Marilia D.V. Braga,
- Guilherme P. Telles,
- Frank A.A. Cara,
- Guilherme Pedrosa,
- João Meidanis,
- and Paulo Arruda
Genome Res. December 2003 13: 2725-2735; Published in Advance January 1, 2003, doi:10.1101/gr.1532103
...of the genome complexity of sugarcane, we undertook a large-scale expressed sequence tag (EST) program. More than 260,000 cDNA clones were partially sequenced from 26 standard cDNA libraries generated from different sugarcane tissues. After the processing of the sequences, 237,954 high-quality ESTs were...
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Letter: EbEST: An Automated Tool Using Expressed Sequence Tags to Delineate Gene Structure
- Jian Jiang and
- Howard J. Jacob
Genome Res. March 1, 1998 8: 268-275; doi:10.1101/gr.8.3.268
...Large numbers of expressed sequence tags (ESTs) continue to fill public and private databases with partial cDNA sequences. However, using this huge amount of ESTs to facilitate gene finding in genomic sequence imposes a challenge, especially to wet-lab scientists who often have limited computing...
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METHODS: IMAGE cDNA Clones, UniGene Clustering, and ACeDB: An Integrated Resource for Expressed Sequence Information
- Greg Miller,
- Rainer Fuchs,
- and Eric Lai
Genome Res. October 1, 1997 7: 1027-1032; doi:10.1101/gr.7.10.1027
..., Research Triangle Park, North Carolina 27709 Abstract In this study we describe a new information resource that provides integrated access to information on IMAGE (integrated molecular analysis of genomes and their expression) cDNA library clones and derived expressed sequence tags (ESTs). We...
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LETTER: Identification of Candidate Coding Region Single Nucleotide Polymorphisms in 165 Human Genes Using Assembled Expressed Sequence Tags
- Kavita Garg,
- Philip Green,
- and Deborah A. Nickerson
Genome Res. November 1, 1999 9: 1087-1092; doi:10.1101/gr.9.11.1087
..., University of Washington, Seattle, Washington 98195 USA Abstract Using assembled expressed sequence tags (ESTs) from 50 different cDNA libraries, we have identified contigs that represent the complete coding sequences of 850 known human genes, and have scanned these for high quality sequence...
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LETTERS: Identification of 4370 expressed sequence tags from a 3'-end-specific cDNA library of human skeletal muscle by DNA sequencing and filter hybridization.
- G Lanfranchi,
- T Muraro,
- F Caldara,
- B Pacchioni,
- A Pallavicini,
- D Pandolfo,
- S Toppo,
- S Trevisan,
- S Scarso,
- and G Valle
Genome Res. January 1996 6: 35-42; doi:10.1101/gr.6.1.35
...a human colorectal cancer cDNA library by partial sequencing. Hum. Mol. Genet. 4 : 37 – 43 . Gieser, L. , Swaroop. A. Gieser, L. and Swaroop. A. 1992 . Expressed sequence tags and chromosomal localization of cDNA clones from a subtracted retinal pigment epithelium library. Genomics 13 : 873 – 876 . Höfte...
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ARTICLE: Mapping expressed sequence tag sites on yeast artificial chromosome clones of Arabidopsis thaliana DNA.
- F D Agyare,
- D A Lashkari,
- A Lagos,
- A F Namath,
- G Lagos,
- R W Davis,
- and B Lemieux
Genome Res. January 1997 7: 1-9; doi:10.1101/gr.7.1.1
....-Y. Mache, R. Raynal, M. Cooke, R. Grellet, F. Delseny, M. Parmentier, Y. de Marcillac, G. Gigot, C. Fleck, J. Phillips, G. Axelos, M. Bardet, C. Tremousaygue, D. and Lescure. B. 1993 . An inventory of 1,152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana . Plant J...

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