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  1. Research: Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
    • James Hadfield,
    • Simon R. Harris,
    • Helena M.B. Seth-Smith,
    • Surendra Parmar,
    • Patiyan Andersson,
    • Philip M. Giffard,
    • Julius Schachter,
    • Jeanne Moncada,
    • Louise Ellison,
    • María Lucía Gallo Vaulet,
    • Marcelo Rodríguez Fermepin,
    • Frans Radebe,
    • Suyapa Mendoza,
    • Sander Ouburg,
    • Servaas A. Morré,
    • Konrad Sachse,
    • Mirja Puolakkainen,
    • Suvi J. Korhonen,
    • Chris Sonnex,
    • Rebecca Wiggins,
    • Hamid Jalal,
    • Tamara Brunelli,
    • Patrizia Casprini,
    • Rachel Pitt,
    • Cathy Ison,
    • Alevtina Savicheva,
    • Elena Shipitsyna,
    • Ronza Hadad,
    • Laszlo Kari,
    • Matthew J. Burton,
    • David Mabey,
    • Anthony W. Solomon,
    • David Lewis,
    • Peter Marsh,
    • Magnus Unemo,
    • Ian N. Clarke,
    • Julian Parkhill,
    • and Nicholas R. Thomson
    Genome Res. July 2017 27: 1220-1229; Published in Advance June 6, 2017, doi:10.1101/gr.212647.116
    ...isolates. Exp Ther Med 10: 1189–1193. Joseph SJ, Didelot X, Gandhi K, Dean D, Read TD. 2011. Interplay of recombination and selection in the s of Chlamydia trachomatis. Biol Direct 6: 28. Joseph SJ, Didelot X, Rothschild J, de Vries HJC,Morre SA, Read TD, DeanD. 2012. Population genomics of Chlamydia...
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  2. Method: Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture
    • Helena M.B. Seth-Smith,
    • Simon R. Harris,
    • Rachel J. Skilton,
    • Frans M. Radebe,
    • Daniel Golparian,
    • Elena Shipitsyna,
    • Pham Thanh Duy,
    • Paul Scott,
    • Lesley T. Cutcliffe,
    • Colette O’Neill,
    • Surendra Parmar,
    • Rachel Pitt,
    • Stephen Baker,
    • Catherine A. Ison,
    • Peter Marsh,
    • Hamid Jalal,
    • David A. Lewis,
    • Magnus Unemo,
    • Ian N. Clarke,
    • Julian Parkhill,
    • and Nicholas R. Thomson
    Genome Res. May 2013 23: 855-866; Published in Advance March 22, 2013, doi:10.1101/gr.150037.112
    ...Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture Helena M.B. Seth-Smith 1 , 11 , Simon R. Harris 1 , Rachel J. Skilton 2 , Frans M. Radebe 3 , Daniel Golparian 4 , Elena Shipitsyna 5...
  3. LETTER: Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots
    • João P. Gomes,
    • William J. Bruno,
    • Alexandra Nunes,
    • Nicole Santos,
    • Carlos Florindo,
    • Maria J. Borrego,
    • and Deborah Dean
    Genome Res. January 2007 17: 50-60; Published in Advance November 7, 2006, doi:10.1101/gr.5674706
    ...Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots João P. Gomes 1 , 2 , William J. Bruno 3 , Alexandra Nunes 2 , Nicole Santos 4 , Carlos Florindo 2 , Maria J. Borrego 2...
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