Searching journal content for articles similar to Thayer et al. 9 (1): 79.

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  1. Methods: Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome
    • Vincent Magrini,
    • Wesley C. Warren,
    • John Wallis,
    • William E. Goldman,
    • Jian Xu,
    • Elaine R. Mardis,
    • and John D. McPherson
    Genome Res. August 2004 14: 1603-1609; doi:10.1101/gr.2361404
    ...sensitivity for identifying clone overlap ( Olson et al. 1986 ; Riles et al. 1993 ; Wong et al. 1997 ). In multiple-complete-digest restriction-fragment mapping, MCD, confirmed cosmids cloned from YACs used three independent digestions, and redundant clone coverage of from 15 to 30X was necessary for mapping...
  2. Methods: DNA Mapping Using Microfluidic Stretching and Single-Molecule Detection of Fluorescent Site-Specific Tags
    • Eugene Y. Chan,
    • Nuno M. Goncalves,
    • Rebecca A. Haeusler,
    • Amie J. Hatch,
    • Jonathan W. Larson,
    • Anthony M. Maletta,
    • Gregory R. Yantz,
    • Eugene D. Carstea,
    • Martin Fuchs,
    • Gordon G. Wong,
    • Steven R. Gullans,
    • and Rudolf Gilmanshin
    Genome Res. June 2004 14: 1137-1146; doi:10.1101/gr.1635204
    ...SNPs that correlate with disease loci ( Shi 2002 ). Nonetheless, restriction mapping has fundamental drawbacks that limit its utility for comparative genomics. Digestion of the DNA removes information regarding the ordering of the fragments, requiring the use of multiple enzymes to construct...
  3. Methods: Hierarchical Scaffolding With Bambus
    • Mihai Pop,
    • Daniel S. Kosack,
    • and Steven L. Salzberg
    Genome Res. January 2004 14: 149-159; doi:10.1101/gr.1536204
    ...a particular relative placement of two contigs. When the linking data contain errors, the general problem of globally satisfying all constraints is intractable ( Huson et al. 2001 ; Kent and Haussler 2001 ). Interestingly, the associated contig orientation problem is also intractable, as is the complementary...
  4. METHODS: Assembly of the Working Draft of the Human Genome with GigAssembler
    • W. James Kent and
    • David Haussler
    Genome Res. September 1, 2001 11: 1541-1548; Published in Advance August 16, 2001, doi:10.1101/gr.183201
    ....G. , White O. , Adams M.D. , Kerlavage A.R. ( 1995 ) TIGR assembler: A new tool for assembling large shotgun sequencing projects. Genome Sci. Tech. 1 : 9 – 19 . ↵ Thayer E.C. , Olson M.V. , Karp R.M. ( 1999 ) Error checking and graphical representation of multiple-complete-digest (MCD) restriction-fragment...
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