Searching journal content for articles similar to Temnykh et al. 11 (8): 1441.

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  1. Resource: Structural variants in 3000 rice genomes
    • Roven Rommel Fuentes,
    • Dmytro Chebotarov,
    • Jorge Duitama,
    • Sean Smith,
    • Juan Fernando De la Hoz,
    • Marghoob Mohiyuddin,
    • Rod A. Wing,
    • Kenneth L. McNally,
    • Tatiana Tatarinova,
    • Andrey Grigoriev,
    • Ramil Mauleon,
    • and Nickolai Alexandrov
    Genome Res. May 2019 29: 870-880; Published in Advance April 16, 2019, doi:10.1101/gr.241240.118
    ...closest relatives in genus Oryza (Hurwitz et al. 2010) and between representatives of its major subgroups (Schatz et al. 2014) and elucidated association between structural variants and rice phenotypes using multiple rice accessions (Xu et al. 2012; Duitama et al. 2015). Examples of SVs affecting rice...
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  2. Research: Computational analysis and characterization of UCE-like elements (ULEs) in plant genomes
    • Konstantinos Kritsas,
    • Samuel E. Wuest,
    • Daniel Hupalo,
    • Andrew D. Kern,
    • Thomas Wicker,
    • and Ueli Grossniklaus
    Genome Res. December 2012 22: 2455-2466; Published in Advance September 17, 2012, doi:10.1101/gr.129346.111
    ....cns.fr/externe/GenomeBrowser/Vitis), poplar version 1.1, P. patens version 1.1, and C. reinhardtii version 4.0 from the Joint Genome Institute (JGI) (jgi.doe.gov), Oryza sativa sb. japonica (rice) version 6 (rice.plantbiology.msu.edu/), B. distachyon from brachypodium.org, maize version 2 from plantGDB.org, papaya version 4 from phytozome...
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  3. LETTER: Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species Genome Res. September 2005 15: 1284-1291; Published in Advance August 18, 2005, doi:10.1101/gr.3869505
    ...Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species The Rice Chromosome 3 Sequencing Consortium 1 , 2 Abstract Rice ( Oryza sativa L.) chromosome 3 is evolutionarily conserved across the cultivated cereals and shares large...
  4. LETTER: Comparative genome analyses of Arabidopsis spp.: Inferring chromosomal rearrangement events in the evolutionary history of A. thaliana
    • Krithika Yogeeswaran,
    • Amy Frary,
    • Thomas L. York,
    • Alison Amenta,
    • Andrew H. Lesser,
    • June B. Nasrallah,
    • Steven D. Tanksley,
    • and Mikhail E. Nasrallah
    Genome Res. April 2005 15: 505-515; doi:10.1101/gr.3436305
    ..., June B. Nasrallah 1 , Steven D. Tanksley 3 , and Mikhail E. Nasrallah 1 , 7 1 Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA 2 Department of Biological Statistics and Computational Biology, Cornell University, Ithaca...
  5. LETTER: Incongruent Patterns of Local and Global Genome Size Evolution in Cotton
    • Corrinne E. Grover,
    • HyeRan Kim,
    • Rod A. Wing,
    • Andrew H. Paterson,
    • and Jonathan F. Wendel
    Genome Res. August 2004 14: 1474-1482; Published in Advance July 15, 2004, doi:10.1101/gr.2673204
    ...., Sessions, A., Oeller, P., Varma, H., et al. 2002 . A draft sequence of the rice ( Oryza sativa L. ssp. japonica ). Science 296 : 92 –100. ↵ Gordon, D., Abajian, C., and Green, P. 1998 . CONSED: A graphical tool for sequence finishing. Genome Res. 8 : 195 –202. ↵ Green, P. 1999. Phrap documentation. http...
  6. Methods: Identification of transposable elements using multiple alignments of related genomes
    • Anat Caspi and
    • Lior Pachter
    Genome Res. February 2006 16: 260-270; Published in Advance December 14, 2005, doi:10.1101/gr.4361206
    ...sequenced s. Despite some knowledge about sequence structure in transposons, for example, they typically contain open reading frames in the interior or some characterizing repeat sequences at the ends, their mechanisms for replication are poorly understood, and their classification into families is far from...
  7. REVIEW: Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health
    • Victoria P. Belancio,
    • Dale J. Hedges,
    • and Prescott Deininger
    Genome Res. March 2008 18: 343-358; Published in Advance February 6, 2008, doi:10.1101/gr.5558208
    ...( Oryza sativa ) ( Wicker et al. 2001 ; International Rice Genome Sequencing Project 2005 ). Among those mammals whose genomic sequence has been obtained thus far, M. domesticus appears to have the largest genomic TE content, approaching 52% of the ( Mikkelsen et al. 2007 ), while human estimates approach...
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