Searching journal content for articles similar to Tang et al. 32 (8): 1502.

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  1. Perspective: Decrypting noncoding RNA interactions, structures, and functional networks
    • Muller Fabbri,
    • Leonard Girnita,
    • Gabriele Varani,
    • and George A. Calin
    Genome Res. September 2019 29: 1377-1388; Published in Advance August 21, 2019, doi:10.1101/gr.247239.118
    ...interact not only with RNAs (as exemplified by ceRNAs or sponges) but also with DNAs, proteins, and lipids, adding complexity and functional versatility to the regulatory networks. Each NIN is composed of one or more ncRNAs, each having IEs and SEs that participate in direct physical interactions (through...
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  2. Perspective: Linking RNA biology to lncRNAs
    • Loyal A. Goff and
    • John L. Rinn
    Genome Res. October 2015 25: 1456-1465; doi:10.1101/gr.191122.115
    ..., Massachusetts 02142, USA Corresponding authors: loyalgoff@jhmi.edu , john_rinn@harvard.edu Abstract The regulatory potential of RNA has never ceased to amaze: from RNA catalysis, to RNA-mediated splicing, to RNA-based silencing of an entire chromosome during dosage compensation. More...
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  3. Research: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly
    • Kang Du,
    • Oliver Deusch,
    • Ilja Bezrukov,
    • Christa Lanz,
    • Yann Guiguen,
    • Margarete Hoffmann,
    • Anette Habring,
    • Detlef Weigel,
    • Manfred Schartl,
    • and Christine Dreyer
    Genome Res. March 2025 35: 489-498; Published in Advance March 5, 2025, doi:10.1101/gr.279582.124
    ...as a master male determining factor is evident from the assembly of the MSY. It cannot be excluded that such a gene failed to be assembled or missed in the annotation. On the other hand, allelic variation on the coding sequence level or in noncoding, regulatory regions of a gene present on the X and the Y...
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  4. Method: Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ
    • Yongkang Long,
    • Bin Zhang,
    • Shuye Tian,
    • Jia Jia Chan,
    • Juexiao Zhou,
    • Zhongxiao Li,
    • Yisheng Li,
    • Zheng An,
    • Xingyu Liao,
    • Yu Wang,
    • Shiwei Sun,
    • Ying Xu,
    • Yvonne Tay,
    • Wei Chen,
    • and Xin Gao
    Genome Res. April 2023 33: 644-657; Published in Advance April 28, 2023, doi:10.1101/gr.277177.122
    ..., extended regions, ncRNA, and intergenic regions. Similar to the previous study (Xiao et al. 2016), PAS located within the terminal exon was the most abundant category (73.7%), followed by intronic PAS (17.0%). We found that APAIQ was able to identify PAS from all these categories, whereas PAS from...
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  5. Research: Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs
    • Joana Carlevaro-Fita,
    • Taisia Polidori,
    • Monalisa Das,
    • Carmen Navarro,
    • Tatjana I. Zoller,
    • and Rory Johnson
    Genome Res. February 2019 29: 208-222; Published in Advance December 26, 2018, doi:10.1101/gr.229922.117
    ...RNAs), of which at least a fraction is likely to have evolutionarily selected biological functions (Ulitsky and Bartel 2013). Our current working hypothesis is that, similar to proteins, lncRNA functions are encoded in primary sequence through “domains,” or discrete elements that mediate specific aspects of lnc...
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