Searching journal content for articles similar to Tallack et al. 22 (12): 2385.

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  1. Research: A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells
    • Michael R. Tallack,
    • Tom Whitington,
    • Wai Shan Yuen,
    • Elanor N. Wainwright,
    • Janelle R. Keys,
    • Brooke B. Gardiner,
    • Ehsan Nourbakhsh,
    • Nicole Cloonan,
    • Sean M. Grimmond,
    • Timothy L. Bailey,
    • and Andrew C. Perkins
    Genome Res. August 2010 20: 1052-1063; Published in Advance May 27, 2010, doi:10.1101/gr.106575.110
    ...A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells Michael R. Tallack 1 , 4 , Tom Whitington 1 , 4 , Wai Shan Yuen 1 , Elanor N. Wainwright 1 , Janelle R. Keys 1 , Brooke B. Gardiner 1 , 2...
  2. Method: Scalable cell-specific coexpression networks for granular regulatory pattern discovery with NeighbourNet
    • Yidi Deng,
    • Jiadong Mao,
    • Jarny Choi,
    • and Kim-Anh Lê Cao
    Genome Res. April 2026 36: 785-801; Published in Advance March 5, 2026, doi:10.1101/gr.281171.125
    ...et al. 2020). In contrast, meta-network 2, which exhibited increased involvement during terminal erythropoiesis, highlighted a shift towards network modules related to hemoglobin synthesis (e.g., KLF1-mediated ABCB10 expression) (Tallack et al. 2010) and erythrocyte membrane protein synthesis (e...
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  3. Research: Regulatory divergence in Drosophila revealed by mRNA-seq
    • C. Joel McManus,
    • Joseph D. Coolon,
    • Michael O. Duff,
    • Jodi Eipper-Mains,
    • Brenton R. Graveley,
    • and Patricia J. Wittkopp
    Genome Res. June 2010 20: 816-825; Published in Advance March 30, 2010, doi:10.1101/gr.102491.109
    ...Regulatory divergence in Drosophila revealed by mRNA-seq C. Joel McManus 1 , Joseph D. Coolon 2 , Michael O. Duff 1 , 3 , Jodi Eipper-Mains 1 , Brenton R. Graveley 1 , 3 , 4 and Patricia J. Wittkopp 2 , 4 1...
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  4. Method: mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain
    • Paul Hammer,
    • Michaela S. Banck,
    • Ronny Amberg,
    • Cheng Wang,
    • Gabriele Petznick,
    • Shujun Luo,
    • Irina Khrebtukova,
    • Gary P. Schroth,
    • Peter Beyerlein,
    • and Andreas S. Beutler
    Genome Res. June 2010 20: 847-860; Published in Advance May 7, 2010, doi:10.1101/gr.101204.109
    ...mRNA-seq with agnostic splice site discovery for nervous system transcriptomics tested in chronic pain Paul Hammer 1 , 6 , Michaela S. Banck 2 , 6 , Ronny Amberg 1 , 2 , 6 , Cheng Wang 3 , 7 , Gabriele Petznick 1 , 4 , Shujun...
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  5. Research: Regeneration alters open chromatin and cis-regulatory landscape of erythroid precursors
    • Yichao Zhou,
    • Venkatasai Rahul Dogiparthi,
    • Hannah L. Harris,
    • Suhita Ray,
    • Avik Choudhuri,
    • Song Yang,
    • Yi Zhou,
    • Leonard I. Zon,
    • M. Jordan Rowley,
    • and Kyle J. Hewitt
    Genome Res. July 2025 35: 1518-1529; Published in Advance June 2, 2025, doi:10.1101/gr.279949.124
    ...Hughes Medical Institute, Boston Children's Hospital, Boston, Massachusetts 02115, USA Corresponding author: kyle.hewitt@unmc.eduAbstractStress erythropoiesis elevates the rate of red blood cell (RBC) production as a physiological response to stressors such as anemia or hypoxia. In acute anemia, RBC...
  6. Erratum: Erratum Genome Res. December 2010 20: 1748
    ...genome;20/12/1748 1088-9051 Erratum Erratum Genome Research 20: 1052–1063 (2010) A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells Michael R. Tallack, Tom Whitington, Wai Shan Yuen, Elanor N. Wainwright, Janelle R. Keys, Brooke B. Gardiner, Ehsan Nourbakhsh...
  7. Research: Cohesin organizes 3D DNA contacts surrounding active enhancers in C. elegans
    • Jun Kim,
    • Haoyu Wang,
    • and Sevinç Ercan
    Genome Res. May 2025 35: 1108-1123; Published in Advance April 10, 2025, doi:10.1101/gr.279365.124
    ...binding between the two groups of genes upon WAPL-1 depletion was not accompanied by changes in binding of RNA Pol II (Fig. 8D; Supplemental Fig. S6E). Orthogonally, mRNA-seq analyses showed minimal change upon 1 h depletion of SMC-3 and WAPL-1 (Fig. 8E). We considered the possibility that chromatin may...
  8. Method: A scalable computational framework for predicting gene expression from candidate cis-regulatory elements
    • Qinhu Zhang,
    • Siguo Wang,
    • Zhipeng Li,
    • Wenzheng Bao,
    • Wenjian Liu,
    • and De-Shuang Huang
    Genome Res. February 2026 36: 361-374; Published in Advance January 16, 2026, doi:10.1101/gr.281219.125
    ...rectangles and correctly identified cCREs are represented by blue rectangles with red outlines.To illustrate ScPGE's capability in detecting active enhancers for a given locus, we focused on two important genes (JUNB [Chen et al. 2022] and KLF1 [Myers et al. 2025]) in the human hematopoietic system. We...
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  9. Research: ACTB methylation regulates SMARCA4 genomic occupancy to promote translation and reduce adhesion in colorectal cancer cells
    • Elina Abaev-Schneiderman,
    • Linh Nguyen,
    • Raz Shalev,
    • Tzofit Elbaz Biton,
    • Anand Chopra,
    • Giritharan Jagadeesan,
    • Daniel Sevilla-Sanchez,
    • Nili Tickotsky Moskovitz,
    • Liron Levin,
    • Michal Feldman,
    • Capucine Van Rechem,
    • and Dan Levy
    Genome Res. April 2026 36: 684-694; Published in Advance March 25, 2026, doi:10.1101/gr.280534.125
    ...(Macherey-Nagel). Samples were prepared in three biological replicates for each condition. Libraries were prepared using the INCPM-mRNA-seq protocol. Briefly, the poly(A) fraction (mRNA) was purified from 500 ng of total input RNA followed by fragmentation and the generation of double-stranded c...
  10. Research: Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
    • Weisheng Wu,
    • Christapher S. Morrissey,
    • Cheryl A. Keller,
    • Tejaswini Mishra,
    • Maxim Pimkin,
    • Gerd A. Blobel,
    • Mitchell J. Weiss,
    • and Ross C. Hardison
    Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
    ...-7 cells or megakaryocytes. Additional sites were bound in cells representing progressively more mature erythroblasts, where Cpox was highly expressed (Fig. 3B). GATA1 and KLF1 were also bound to the TAL1 OSs in erythroblasts. These additional sites of binding byTAL1 andotherhematopoietic TFsmay...
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