Searching journal content for articles similar to Tallack et al. 20 (8): 1052.

Displaying results 1-10 of 10

For checked items

view abstracts
download to citation manager

Select this article
Research: Novel roles for KLF1 in erythropoiesis revealed by mRNA-seq
- Michael R. Tallack,
- Graham W. Magor,
- Benjamin Dartigues,
- Lei Sun,
- Stephen Huang,
- Jessica M. Fittock,
- Sally V. Fry,
- Evgeny A. Glazov,
- Timothy L. Bailey,
- and Andrew C. Perkins
Genome Res. December 2012 22: 2385-2398; Published in Advance July 26, 2012, doi:10.1101/gr.135707.111
...of global gene regulation by KLF1 using traditional oligonucleotide microarray technology and, more recently, ChIP-seq technology have provided valuable insights into the KLF1-dependent erythroid transcriptome (Drissen et al. 2005; Hodge et al. 2006; Tallack et al. 2010; Pilon et al. 2011). These studies...
Select this article
Research: Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
- Weisheng Wu,
- Yong Cheng,
- Cheryl A. Keller,
- Jason Ernst,
- Swathi Ashok Kumar,
- Tejaswini Mishra,
- Christapher Morrissey,
- Christine M. Dorman,
- Kuan-Bei Chen,
- Daniela Drautz,
- Belinda Giardine,
- Yoichiro Shibata,
- Lingyun Song,
- Max Pimkin,
- Gregory E. Crawford,
- Terrence S. Furey,
- Manolis Kellis,
- Webb Miller,
- James Taylor,
- Stephan C. Schuster,
- Yu Zhang,
- Francesca Chiaromonte,
- Gerd A. Blobel,
- Mitchell J. Weiss,
- and Ross C. Hardison
Genome Res. October 2011 21: 1659-1671; Published in Advance July 27, 2011, doi:10.1101/gr.125088.111
...proFigure 1. Comparison of ChIP-seq data for transcription factor occupancy between primary erythroid cells and the G1E cell system. (A) Factor binding and histone modification profiles are shown for the Hba locus encoding alpha-globins (left) and the Hbb locus encoding beta-globins (right...
OPEN ACCESS ARTICLE
Select this article
Research: Genome-wide identification of TAL1's functional targets: Insights into its mechanisms of action in primary erythroid cells
- Mira T. Kassouf,
- Jim R. Hughes,
- Stephen Taylor,
- Simon J. McGowan,
- Shamit Soneji,
- Angela L. Green,
- Paresh Vyas,
- and Catherine Porcher
Genome Res. August 2010 20: 1064-1083; Published in Advance June 21, 2010, doi:10.1101/gr.104935.110
...network We set out to identify targets of TAL1 with functions in erythropoiesis that may contribute to the erythroid phenotype of the Tal1RER/RERmousewhen their expression is perturbed. From the list of genes identified through ChIP-seq, 80 loci were selected that (1) contained sequences bound by wild...
Select this article
Research: Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
- Weisheng Wu,
- Christapher S. Morrissey,
- Cheryl A. Keller,
- Tejaswini Mishra,
- Maxim Pimkin,
- Gerd A. Blobel,
- Mitchell J. Weiss,
- and Ross C. Hardison
Genome Res. December 2014 24: 1945-1962; Published in Advance October 15, 2014, doi:10.1101/gr.164830.113
..., at multiple stages of hematopoietic differentiation. We combined ChIP-seq and RNA-seq data in six mouse cell types representing a progression from multilineage precursors to differentiated erythroblasts and megakaryocytes. We found that sites of occupancy shift dramatically during commitment to the erythroid...
OPEN ACCESS ARTICLE
Select this article

Erratum: Erratum Genome Res. December 2010 20: 1748

...genome;20/12/1748 1088-9051 Erratum Erratum Genome Research 20: 1052–1063 (2010) A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells Michael R. Tallack, Tom Whitington, Wai Shan Yuen, Elanor N. Wainwright, Janelle R. Keys, Brooke B. Gardiner, Ehsan Nourbakhsh...
Select this article
Research: Chromatin loop dynamics during cellular differentiation are associated with changes to both anchor and internal regulatory features
- Marielle L. Bond,
- Eric S. Davis,
- Ivana Y. Quiroga,
- Anubha Dey,
- Manjari Kiran,
- Michael I. Love,
- Hyejung Won,
- and Douglas H. Phanstiel
Genome Res. August 2023 33: 1258-1268; Published in Advance September 12, 2023, doi:10.1101/gr.277397.122
...differentiate into a megakaryocyte-like state, they lose their potential to differentiate into erythroid cells. We confirmed this with qPCR for KLF1, an erythroid marker, which decreases in expression over differentiation (Supplemental Fig. S1B; Kuvardina et al. 2015). We then performed in situ Hi-C on four...
Select this article
Method: Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints
- Ron Schwessinger,
- Maria C. Suciu,
- Simon J. McGowan,
- Jelena Telenius,
- Stephen Taylor,
- Doug R. Higgs,
- and Jim R. Hughes
Genome Res. October 2017 27: 1730-1742; Published in Advance September 13, 2017, doi:10.1101/gr.220202.117
...polymorphisms are frequently prioritized by intersection with annotated regulatory elements or their potential to alter derived TF binding motifs. Major drawbacks of such approaches are their dependency on incomplete ChIP-seq data and associated transcription factor position weight matrices (PWMs) in specific...
Select this article
Method: Chromatin module inference on cellular trajectories identifies key transition points and poised epigenetic states in diverse developmental processes
- Sushmita Roy and
- Rupa Sridharan
Genome Res. July 2017 27: 1250-1262; Published in Advance April 19, 2017, doi:10.1101/gr.215004.116
...to a more complex lineage structure and for -wide sequencing data, we used ChIP-seq data from a comprehensive study of hematopoiesis (Fig. 1C) by Lara-Astiaso et al. (2014) that measured four chromatin marks in 16 different cell types using ChIP-seq. CMINT outperforms other approaches to finding modules...
OPEN ACCESS ARTICLE
Select this article
Research: Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis
- Maxim Pimkin,
- Andrew V. Kossenkov,
- Tejaswini Mishra,
- Christapher S. Morrissey,
- Weisheng Wu,
- Cheryl A. Keller,
- Gerd A. Blobel,
- Dongwon Lee,
- Michael A. Beer,
- Ross C. Hardison,
- and Mitchell J. Weiss
Genome Res. December 2014 24: 1932-1944; Published in Advance October 15, 2014, doi:10.1101/gr.164178.113
...indicated by arrows and exons represented by black rectangles. ChIP-seq data showing transcription factor occupancy and histonemarks in ERY, MEG, and HPC-7 cells are indicated below (Wilson et al. 2010). A GATA1 OS (boxed) in the Bcl2l1 gene (C ) overlaps with a KLF1 OS identified previously in murine fetal...
OPEN ACCESS ARTICLE
Select this article
Resource: The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
- Stefan Schoenfelder,
- Mayra Furlan-Magaril,
- Borbala Mifsud,
- Filipe Tavares-Cadete,
- Robert Sugar,
- Biola-Maria Javierre,
- Takashi Nagano,
- Yulia Katsman,
- Moorthy Sakthidevi,
- Steven W. Wingett,
- Emilia Dimitrova,
- Andrew Dimond,
- Lucas B. Edelman,
- Sarah Elderkin,
- Kristina Tabbada,
- Elodie Darbo,
- Simon Andrews,
- Bram Herman,
- Andy Higgs,
- Emily LeProust,
- Cameron S. Osborne,
- Jennifer A. Mitchell,
- Nicholas M. Luscombe,
- and Peter Fraser
Genome Res. April 2015 25: 582-597; Published in Advance March 9, 2015, doi:10.1101/gr.185272.114
...randomized ChIP-seq data sets were used (data not shown). To gain further insight into the features of promoter-interacting regions, we defined a set of chromatin states in ESCs, characterized by distinct combinations of factor occupancy and histone modifications (Supplemental Fig. 3H), and analyzed...
OPEN ACCESS ARTICLE

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Tallack et al. 20 (8): 1052.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: