Searching journal content for articles similar to Taddei et al. 19 (4): 611.

Displaying results 1-9 of 9

For checked items

view abstracts
download to citation manager

Select this article
Research: Spatiotemporal kinetics of CAF-1-dependent chromatin maturation ensures transcription fidelity during S-phase
- Boning Chen,
- Heather K. MacAlpine,
- Alexander J. Hartemink,
- and David M. MacAlpine
Genome Res. December 2023 33: 2108-2118; Published in Advance December 11, 2023, doi:10.1101/gr.278273.123
...largely indistinguishable from WT chromatin, but the nascent (pulse) chromatin was more disorganized, suggesting a global defect in chromatin maturation. These studies assessed nucleosome positioning and occupancy in aggregate across the ensemble of gene bodies. Although we also observed similar dynamics...
Select this article
Method: Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase
- Jared M. Peace,
- Sandra K. Villwock,
- John L. Zeytounian,
- Yan Gan,
- and Oscar M. Aparicio
Genome Res. March 2016 26: 365-375; Published in Advance January 4, 2016, doi:10.1101/gr.196857.115
...for analysis of BrdU-IP-seq data. Fkh1 and Fkh2 overexpression advances initiation timing globally To test the hypothesis that Fkh1/2 is ratelimiting for early origin firing, we overexpressed Fkh1 and Fkh2 and analyzed replication origin dynamics. Wild-type (WT) cells harboring a plasmid vector with FKH1...
Select this article
Research: Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
- Harianto Tjong,
- Ke Gong,
- Lin Chen,
- and Frank Alber
Genome Res. July 2012 22: 1295-1305; Published in Advance May 22, 2012, doi:10.1101/gr.129437.111
...interaction frequencies; the emergence, shape, and location of specific gene territories; the relative distances between telomeres; and even the spatial clustering of functionally related chromosome regions such as early replication start sites and tRNA gene loci. Specific molecular interactions between...
Select this article
Letter: Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans
- Andrew P. Jackson,
- John A. Gamble,
- Tim Yeomans,
- Gary P. Moran,
- David Saunders,
- David Harris,
- Martin Aslett,
- Jamie F. Barrell,
- Geraldine Butler,
- Francesco Citiulo,
- David C. Coleman,
- Piet W.J. de Groot,
- Tim J. Goodwin,
- Michael A. Quail,
- Jacqueline McQuillan,
- Carol A. Munro,
- Arnab Pain,
- Russell T. Poulter,
- Marie-Adèle Rajandream,
- Hubert Renauld,
- Martin J. Spiering,
- Adrian Tivey,
- Neil A.R. Gow,
- Barclay Barrell,
- Derek J. Sullivan,
- and Matthew Berriman
Genome Res. December 2009 19: 2231-2244; Published in Advance September 10, 2009, doi:10.1101/gr.097501.109
.... Beyond transposon activity, the remaining breaks in colinearity were due to insertions or deletions of individual genes, most of which are captured in the global gene family analysis below. For instance,C. dubliniensis lacks amember of the IFF gene family, the hyphal-associated HYR1 (orf19.4975). The IFF...
Select this article
Method: Optical mapping reveals a higher level of genomic architecture of chained fusions in cancer
- Eva K.F. Chan,
- Daniel L. Cameron,
- Desiree C. Petersen,
- Ruth J. Lyons,
- Benedetta F. Baldi,
- Anthony T. Papenfuss,
- David M. Thomas,
- and Vanessa M. Hayes
Genome Res. May 2018 28: 726-738; Published in Advance April 4, 2018, doi:10.1101/gr.227975.117
...of Mathematics and Statistics, University of Melbourne, Victoria 3010, Australia; 6Sir Peter MacCallum Department of Oncology, University of Melbourne, Victoria 3010, Australia; 7Bioinformatics and Cancer Genomics, Peter MacCallum Cancer Centre, Victoria 3002, Australia; 8The Kinghorn Cancer Centre, Garvan...
OPEN ACCESS ARTICLE
Select this article
Research: Retrotransposon profiling of RNA polymerase III initiation sites
- Xiaojie Qi,
- Kenneth Daily,
- Kim Nguyen,
- Haoyi Wang,
- David Mayhew,
- Paul Rigor,
- Sholeh Forouzan,
- Mark Johnston,
- Robi David Mitra,
- Pierre Baldi,
- and Suzanne Sandmeyer
Genome Res. April 2012 22: 681-692; Published in Advance January 27, 2012, doi:10.1101/gr.131219.111
.... These include the global targeting of RNA polymerase II (Pol II) promoters in Schizosaccharomyces pombe (e.g., Guo and Levin 2010), the targeting of heterochromatin in S. cerevisiae (Baller et al. 2011), and the targeting of Pol III promoters in S. cerevisiae and Dictyostelium. In S. cerevisiae, long terminal...
Select this article
Letter: Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production
- Juan Lucas Argueso,
- Marcelo F. Carazzolle,
- Piotr A. Mieczkowski,
- Fabiana M. Duarte,
- Osmar V.C. Netto,
- Silvia K. Missawa,
- Felipe Galzerani,
- Gustavo G.L. Costa,
- Ramon O. Vidal,
- Melline F. Noronha,
- Margaret Dominska,
- Maria G.S. Andrietta,
- Sílvio R. Andrietta,
- Anderson F. Cunha,
- Luiz H. Gomes,
- Flavio C.A. Tavares,
- André R. Alcarde,
- Fred S. Dietrich,
- John H. McCusker,
- Thomas D. Petes,
- and Gonçalo A.G. Pereira
Genome Res. December 2009 19: 2258-2270; Published in Advance October 7, 2009, doi:10.1101/gr.091777.109
...from agricultural feedstocks, mainly starch and sucrose. While the United States and Brazil are the dominant players in bioethanol, sharing;70%of the global market, their production systems differ in many respects (Sanderson 2006; Goldemberg 2007). North American bioethanol is currently produced from...
OPEN ACCESS ARTICLE
Select this article
LETTER: Chromodomains direct integration of retrotransposons to heterochromatin
- Xiang Gao,
- Yi Hou,
- Hirotaka Ebina,
- Henry L. Levin,
- and Daniel F. Voytas
Genome Res. March 2008 18: 359-369; Published in Advance February 6, 2008, doi:10.1101/gr.7146408
...observed at genes for these two viruses ( Lewinski et al. 2006 ), and in a separate study, sequence differences among various retroviral integrases were found to correlate with global and local integration patterns ( Derse et al. 2007 ). Analogous to the Ty5/Sir4 relationship, an interaction between HIV...
Select this article
LETTER: Suz12 binds to silenced regions of the genome in a cell-type-specific manner
- Sharon L. Squazzo,
- Henriette O’Geen,
- Vitalina M. Komashko,
- Sheryl R. Krig,
- Victor X. Jin,
- Sung-wook Jang,
- Raphael Margueron,
- Danny Reinberg,
- Roland Green,
- and Peggy J. Farnham
Genome Res. July 2006 16: 890-900; Published in Advance June 2, 2006, doi:10.1101/gr.5306606
...–protein interaction much as do the Sir proteins that are involved in telomeric silencing in yeast ( Fox and McConnell 2005 ). Alternatively, there could be multiple “anchors” for the PRC complex throughout the silenced region. Further work is needed to distinguish these possibilities. In contrast, Gata-2, Gata-3...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Taddei et al. 19 (4): 611.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: