Searching journal content for articles similar to Swanson-Wagner et al. 20 (12): 1689.

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  1. Research: Genic and nongenic contributions to natural variation of quantitative traits in maize
    • Xianran Li,
    • Chengsong Zhu,
    • Cheng-Ting Yeh,
    • Wei Wu,
    • Elizabeth M. Takacs,
    • Katherine A. Petsch,
    • Feng Tian,
    • Guihua Bai,
    • Edward S. Buckler,
    • Gary J. Muehlbauer,
    • Marja C.P. Timmermans,
    • Michael J. Scanlon,
    • Patrick S. Schnable,
    • and Jianming Yu
    Genome Res. December 2012 22: 2436-2444; Published in Advance June 14, 2012, doi:10.1101/gr.140277.112
    ...in the nongenic regions, particularly within a 5-kb window upstream of genes, which highlights the importance of polymorphisms regulating gene expression in shaping the natural variation. Consistent with these findings, TASs collectively explained 44%–59% of the total phenotypic variation across maize...
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  2. Research: Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents
    • Anja Paschold,
    • Yi Jia,
    • Caroline Marcon,
    • Steve Lund,
    • Nick B. Larson,
    • Cheng-Ting Yeh,
    • Stephan Ossowski,
    • Christa Lanz,
    • Dan Nettleton,
    • Patrick S. Schnable,
    • and Frank Hochholdinger
    Genome Res. December 2012 22: 2445-2454; Published in Advance October 19, 2012, doi:10.1101/gr.138461.112
    ...that is, perhaps, unique among higher eukaryotes (Springer et al. 2009). Different maize genotypes display significant copy number variation (CNV) and presence/absence variation (PAV) of genes, which have been hypothesized to contribute to the unusual level of phenotypic diversity in this important cereal...
  3. Resource: Structural variants in 3000 rice genomes
    • Roven Rommel Fuentes,
    • Dmytro Chebotarov,
    • Jorge Duitama,
    • Sean Smith,
    • Juan Fernando De la Hoz,
    • Marghoob Mohiyuddin,
    • Rod A. Wing,
    • Kenneth L. McNally,
    • Tatiana Tatarinova,
    • Andrey Grigoriev,
    • Ramil Mauleon,
    • and Nickolai Alexandrov
    Genome Res. May 2019 29: 870-880; Published in Advance April 16, 2019, doi:10.1101/gr.241240.118
    ...(Żmieńko et al. 2014). For example, the increased copy number of Vrn-A1 and Ppd-B1 genes in wheat causes late flowering and early flowering, respectively (Würschum et al. 2015). Furthermore, a specific tandem duplication in wheat that covers the Rht-D1b gene results in a >70% reduction in plant height (Li...
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