Searching journal content for articles similar to Suzuki et al. 13 (6b): 1534.

Displaying results 1-7 of 7

For checked items

view abstracts
download to citation manager

Select this article
Methods: Human Disease Genes and Their Cloned Mouse Orthologs: Exploration of the FANTOM2 cDNA Sequence Data Set
- Lynn M. Schriml,
- David P. Hill,
- Judith A. Blake,
- Hidemasa Bono,
- Anthony Wynshaw-Boris,
- William J. Pavan,
- Brian Z. Ring,
- Kirk Beisel,
- Mitsutoshi Setou,
- RIKEN GER Group,
- GSL Members,
- and Yasushi Okazaki
Genome Res. June 2003 13: 1496-1500; doi:10.1101/gr.979503
...://www.ensembl.org/ ; and NCBI, http://ncbi.nlm.nih.gov )and full-length cDNA sequencing projects (Mammalian Gene Collection, MGC, http://mgc.nci.nih.gov/ ; and RIKEN's Mouse Encyclopedia, http://www.gsc.riken.go.jp/e/FANTOM/ )are integrated and analyzed. The view of the mouse transcriptome from the FANTOM2 data set...
Select this article
COMMENTARY: A Guide to the Mammalian Genome
- Yasushi Okazaki and
- David A. Hume
Genome Res. June 2003 13: 1267-1272; doi:10.1101/gr.1445603
..., J., and Hayashizaki, Y. 2003 . The mammalian protein–protein interaction database and its viewing system that is linked to the main FANTOM2 viewer. Genome Res. (this issue). ↵ Tajul-Arifin, K., Teasdale, R., Ravasi, T., Hume, D.A., RIKEN GER Group and GSL Members, and Mattick, J.S. 2003...
Select this article
RESOURCE: Connecting Sequence and Biology in the Laboratory Mouse
- Richard M. Baldarelli,
- David P. Hill,
- Judith A. Blake,
- Jun Adachi,
- Masaaki Furuno,
- Dirck Bradt,
- Lori E. Corbani,
- Sharon Cousins,
- Kenneth S. Frazer,
- Dong Qi,
- Longlong Yang,
- Sridhar Ramachandran,
- Deborah Reed,
- Yunxia Zhu,
- Takeya Kasukawa,
- Martin Ringwald,
- Benjamin L. King,
- Lois J. Maltais,
- Louise M. McKenzie,
- Lynn M. Schriml,
- Donna Maglott,
- Deanna M. Church,
- Kim Pruitt,
- Janan T. Eppig,
- Joel E. Richardson,
- Jim A. Kadin,
- and Carol J. Bult
Genome Res. June 2003 13: 1505-1519; doi:10.1101/gr.991003
...gene in Figure 3 . At the time of the load into MGI, FANTOM2 data influenced &gt;1200 MGI gene merges, and ∼200 gene nomenclature updates from mammalian orthologs. Over 9000 unmapped MGI genes were mapped to chromosomes with FANTOM2 data, and &gt;18,000 FANTOM2 gene ontology (GO) annotations...
Select this article
RESOURCE: Inferring Higher Functional Information for RIKEN Mouse Full-Length cDNA Clones With FACTS
- Takeshi Nagashima,
- Diego G. Silva,
- Nikolai Petrovsky,
- Luis A. Socha,
- Harukazu Suzuki,
- Rintaro Saito,
- Takeya Kasukawa,
- Igor V. Kurochkin,
- Akihiko Konagaya,
- and Christian Schönbach
Genome Res. June 2003 13: 1520-1533; doi:10.1101/gr.1019903
...to augment experimental mouse protein–protein interactions (PPI) stored in public databases, including the FANTOM2 PPI Viewer ( Suzuki et al. 2003 ), with reliably inferred PPI information from the literature. As a consequence, we applied a multiple-step strategy to annotate PPI-containing sentences...
Select this article
LETTER: CDS Annotation in Full-Length cDNA Sequence
- Masaaki Furuno,
- Takeya Kasukawa,
- Rintaro Saito,
- Jun Adachi,
- Harukazu Suzuki,
- Richard Baldarelli,
- Yoshihide Hayashizaki,
- and Yasushi Okazaki
Genome Res. June 2003 13: 1478-1487; doi:10.1101/gr.1060303
...on the contig and the sequencer name; (3)a graph view, showing quality scores using a line graph. For details, see Kasukawa et al. ( 2003 ). The ITOP system is available at http://fantom2.gsc.riken.go.jp/ITOP/ as well as from the FANTOM viewer. CDS Curation Strategy in MATRICS In the FANTOM2 MATRICS, CDS...
Select this article
LETTER: Discovery of Imprinted Transcripts in the Mouse Transcriptome Using Large-Scale Expression Profiling
- Itoshi Nikaido,
- Chika Saito,
- Yosuke Mizuno,
- Makiko Meguro,
- Hidemasa Bono,
- Moritoshi Kadomura,
- Tomohiro Kono,
- Gerard A. Morris,
- Paul A. Lyons,
- Mitsuo Oshimura,
- RIKEN GER Group,
- GSL Members,
- Yoshihide Hayashizaki,
- and Yasushi Okazaki
Genome Res. June 2003 13: 1402-1409; doi:10.1101/gr.1055303
...disease loci. These data provide a major resource for understanding the role of imprinting in mammalian inherited traits. The FANTOM2 set of mouse full-length cDNAs has provided the first global view of a mammalian transcriptome and is an essential resource for annotation ( The FANTOM Consortium...
Select this article
ARTICLE: Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia
- Piero Carninci,
- Kazunori Waki,
- Toshiyuki Shiraki,
- Hideaki Konno,
- Kazuhiro Shibata,
- Masayoshi Itoh,
- Katsunori Aizawa,
- Takahiro Arakawa,
- Yoshiyuki Ishii,
- Daisuke Sasaki,
- Hidemasa Bono,
- Shinji Kondo,
- Yuichi Sugahara,
- Rintaro Saito,
- Naoki Osato,
- Shiro Fukuda,
- Kenjiro Sato,
- Akira Watahiki,
- Tomoko Hirozane-Kishikawa,
- Mari Nakamura,
- Yuko Shibata,
- Ayako Yasunishi,
- Noriko Kikuchi,
- Atsushi Yoshiki,
- Moriaki Kusakabe,
- Stefano Gustincich,
- Kirk Beisel,
- William Pavan,
- Vassilis Aidinis,
- Akira Nakagawara,
- William A. Held,
- Hiroo Iwata,
- Tomohiro Kono,
- Hiromitsu Nakauchi,
- Paul Lyons,
- Christine Wells,
- David A. Hume,
- Michela Fagiolini,
- Takao K. Hensch,
- Michelle Brinkmeier,
- Sally Camper,
- Junji Hirota,
- Peter Mombaerts,
- Masami Muramatsu,
- Yasushi Okazaki,
- Jun Kawai,
- and Yoshihide Hayashizaki
Genome Res. June 2003 13: 1273-1289; doi:10.1101/gr.1119703
...to define a set of more than 37,000 TU that mapped to the ( Okazaki et al. 2002 ). If we include singletons, the number of candidates to be independent TU increased to ∼70,000, which certainly represent the most extensive coverage of a mammalian transcriptome so far. However, we have not attempted...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Suzuki et al. 13 (6b): 1534.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: