Searching journal content for articles similar to Sutter et al. 14 (12): 2388.

Displaying results 1-10 of 10

For checked items

view abstracts
download to citation manager

Select this article
Resource: The genomic architecture of segmental duplications and associated copy number variants in dogs
- Thomas J. Nicholas,
- Ze Cheng,
- Mario Ventura,
- Katrina Mealey,
- Evan E. Eichler,
- and Joshua M. Akey
Genome Res. March 2009 19: 491-499; Published in Advance January 7, 2009, doi:10.1101/gr.084715.108
...of segmental duplications and associated copy number variants (CNVs) in the modern domesticated dog, Canis familiaris , which exhibits considerable morphological, physiological, and behavioral variation. Through computational analyses of the publicly available canine reference sequence, we estimate...
Select this article
Research: Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome
- Erik Axelsson,
- Matthew T. Webster,
- Abhirami Ratnakumar,
- The LUPA Consortium,
- Chris P. Ponting,
- and Kerstin Lindblad-Toh
Genome Res. January 2012 22: 51-63; Published in Advance October 17, 2011, doi:10.1101/gr.124123.111
...in a number of dog breeds and several carnivores, we show here that this gene was inactivated early in canid evolution. We next use patterns of linkage disequilibrium using more than 170,000 SNP markers typed in almost 500 dogs to estimate the recombination rates in the dog genome using a coalescent...
OPEN ACCESS ARTICLE
Select this article
Research: The recombination landscape of the zebra finch Taeniopygia guttata genome
- Niclas Backström,
- Wolfgang Forstmeier,
- Holger Schielzeth,
- Harriet Mellenius,
- Kiwoong Nam,
- Elisabeth Bolund,
- Matthew T. Webster,
- Torbjörn Öst,
- Melanie Schneider,
- Bart Kempenaers,
- and Hans Ellegren
Genome Res. April 2010 20: 485-495; Published in Advance March 31, 2010, doi:10.1101/gr.101410.109
...between recombination rate and GC content, as well as GC-rich sequence motifs. Levels of linkage disequilibrium (LD) were significantly higher in regions of low recombination, showing that heterogeneity in recombination rates have left a footprint on the genomic landscape of LD in zebra finch populations...
Select this article
Resource: Mapping DNA structural variation in dogs
- Wei-Kang Chen,
- Joshua D. Swartz,
- Laura J. Rush,
- and Carlos E. Alvarez
Genome Res. March 2009 19: 500-509; Published in Advance November 17, 2008, doi:10.1101/gr.083741.108
...to group according to breed classes. Our combined findings suggest many CNVs are (1) in linkage disequilibrium with flanking sequence, and (2) associated with breed-specific traits. We discuss how a catalog of structural variation in dogs will accelerate the identification of the genetic basis of canine...
Select this article
ARTICLE: Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds
- Heidi G. Parker,
- Anna V. Kukekova,
- Dayna T. Akey,
- Orly Goldstein,
- Ewen F. Kirkness,
- Kathleen C. Baysac,
- Dana S. Mosher,
- Gustavo D. Aguirre,
- Gregory M. Acland,
- and Elaine A. Ostrander
Genome Res. November 2007 17: 1562-1571; Published in Advance October 4, 2007, doi:10.1101/gr.6772807
...and extensive linkage disequilibrium, may also increase the difficulty associated with fine mapping and identifying causative mutations. One way to address this problem is by combining data from multiple breeds segregating the same trait after initial linkage has been determined. The multibreed approach...
Select this article
PERSPECTIVE: The canine genome
- Elaine A. Ostrander and
- Robert K. Wayne
Genome Res. December 2005 15: 1706-1716; doi:10.1101/gr.3736605
...traits and vary in behavior and the incidence of genetic disease, genomic-wide scans for linkage disequilibrium may allow the discovery of genes influencing breed-specific characteristics. Finally, we review studies that have utilized the dog to understand the genetic underpinning of several traits...
Select this article
RESOURCE: Initial sequence and comparative analysis of the cat genome
- Joan U. Pontius,
- James C. Mullikin,
- Douglas R. Smith,
- Agencourt Sequencing Team,
- Kerstin Lindblad-Toh,
- Sante Gnerre,
- Michele Clamp,
- Jean Chang,
- Robert Stephens,
- Beena Neelam,
- Natalia Volfovsky,
- Alejandro A. Schäffer,
- Richa Agarwala,
- Kristina Narfström,
- William J. Murphy,
- Urs Giger,
- Alfred L. Roca,
- Agostinho Antunes,
- Marilyn Menotti-Raymond,
- Naoya Yuhki,
- Jill Pecon-Slattery,
- Warren E. Johnson,
- Guillaume Bourque,
- Glenn Tesler,
- NISC Comparative Sequencing Program,
- and Stephen J. O’Brien
Genome Res. November 2007 17: 1675-1689; doi:10.1101/gr.6380007
...in the cat than FeLV or RD114 sequences ( Fig. 4 ; Supplemental Fig. S3; Table 3 ). Identification of 327,000 new SNPs, 208,177 new STR loci, and a mosaic pattern of homozygosity useful for linkage disequilibrium mapping of complex traits in the cat ( Fig. 5 ). A dynamic online browser of Genome Annotation...
Select this article
Mini-Review: Large-scale genomic analysis of the domestic dog informs biological discovery
- Reuben M. Buckley and
- Elaine A. Ostrander
Genome Res. June 2024 34: 811-821; Published in Advance July 2, 2024, doi:10.1101/gr.278569.123
...contexts. Also, although possible, performing CRISPR-Cas9 in dogs is expensive and inefficient, and animal use issues are a major concern (Zou et al. 2015; Tian et al. 2023). Variant prioritization is also made more challenging in dogs owing to extensive linkage disequilibrium (LD) caused by breeding...
OPEN ACCESS ARTICLE
Select this article
Dog Special/Letters: Short interspersed elements (SINEs) are a major source of canine genomic diversity
- Wei Wang and
- Ewen F. Kirkness
Genome Res. December 2005 15: 1798-1808; doi:10.1101/gr.3765505
....J., Kirkness, E.F., Kruglyak, L., and Ostrander, E.A. 2004 . Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res. 14 : 2388 -2396. ↵ Szabo, Z., Levi-Minzi, S.A., Christiano, A.M., Struminger, C., Stoneking, M., Batzer, M.A., and Boyd, C.D. 1999 . Sequential loss of two...
Select this article
Dog Special/Resources: Construction of a 2-Mb resolution BAC microarray for CGH analysis of canine tumors
- Rachael Thomas,
- Allyson Scott,
- Cordelia F. Langford,
- Susan P. Fosmire,
- Cristan M. Jubala,
- Travis D. Lorentzen,
- Christophe Hitte,
- Elinor K. Karlsson,
- Ewen Kirkness,
- Elaine A. Ostrander,
- Francis Galibert,
- Kerstin Lindblad-Toh,
- Jaime F. Modiano,
- and Matthew Breen
Genome Res. December 2005 15: 1831-1837; doi:10.1101/gr.3825705
...., and Ostrander, E.A. 2004 . Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res. 14 : 2388 -2396. ↵ Thomas, R., Smith, K.C., Gould, R., Gower, S.M., Binns, M.M., and Breen, M. 2001 . Molecular cytogenetic analysis of a novel high-grade canine T-lymphoblastic lymphoma demonstrating...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Sutter et al. 14 (12): 2388.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: