Searching journal content for articles similar to Sunwoo et al. 19 (3): 347.

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  1. Resource: The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
    • Thomas Derrien,
    • Rory Johnson,
    • Giovanni Bussotti,
    • Andrea Tanzer,
    • Sarah Djebali,
    • Hagen Tilgner,
    • Gregory Guernec,
    • David Martin,
    • Angelika Merkel,
    • David G. Knowles,
    • Julien Lagarde,
    • Lavanya Veeravalli,
    • Xiaoan Ruan,
    • Yijun Ruan,
    • Timo Lassmann,
    • Piero Carninci,
    • James B. Brown,
    • Leonard Lipovich,
    • Jose M. Gonzalez,
    • Mark Thomas,
    • Carrie A. Davis,
    • Ramin Shiekhattar,
    • Thomas R. Gingeras,
    • Tim J. Hubbard,
    • Cedric Notredame,
    • Jennifer Harrow,
    • and Roderic Guigó
    Genome Res. September 2012 22: 1775-1789; doi:10.1101/gr.132159.111
    ...for the formation of nuclear paraspeckles (Sunwoo et al. 2009). In addition, >25% of lncRNA genes show evidence of alternative splicing with at least two different transcript isoforms per gene locus (Fig. 3D). Themost highly spliced lncRNA gene is PCBP1-AS1 with 40 annotated isoforms. This human lncRNA gene...
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  2. Perspective: Linking RNA biology to lncRNAs
    • Loyal A. Goff and
    • John L. Rinn
    Genome Res. October 2015 25: 1456-1465; doi:10.1101/gr.191122.115
    ...-splicing of group I introns. Annu Rev Biochem 59: 543–568. Cech TR, Steitz JA. 2014. The noncoding RNA revolution-trashing old rules to forge new ones. Cell 157: 77–94. Chalei V, Sansom SN, Kong L, Lee S, Montiel JF, Vance KW, Ponting CP. 2014. The long non-coding RNADali is an epigenetic regulator of neural...
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  3. Research: Genome-wide analysis of long noncoding RNA stability
    • Michael B. Clark,
    • Rebecca L. Johnston,
    • Mario Inostroza-Ponta,
    • Archa H. Fox,
    • Ellen Fortini,
    • Pablo Moscato,
    • Marcel E. Dinger,
    • and John S. Mattick
    Genome Res. May 2012 22: 885-898; Published in Advance March 9, 2012, doi:10.1101/gr.131037.111
    .... 2011). Surprisingly, given its identification as a functional ‘‘architectural’’ RNA and similar to Friedel et al. (2009),Neat1 was very unstable with a half-life of <30 min by array and 15 min by qPCR (Fig. 7B). As Neat1 is unspliced and has short, ;3.2 kb (Neat1_v1/Men epsilon) and long, ;20 kb (Neat1...
  4. Method: Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
    • Hidenori Tani,
    • Rena Mizutani,
    • Kazi Abdus Salam,
    • Keiko Tano,
    • Kenichi Ijiri,
    • Ai Wakamatsu,
    • Takao Isogai,
    • Yutaka Suzuki,
    • and Nobuyoshi Akimitsu
    Genome Res. May 2012 22: 947-956; Published in Advance February 27, 2012, doi:10.1101/gr.130559.111
    ...Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals Hidenori Tani 1 , Rena Mizutani 1 , Kazi Abdus Salam 1 , Keiko Tano 1 , Kenichi Ijiri 1 , Ai Wakamatsu 2 , Takao Isogai...
  5. Method: New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes
    • Brian J. Parker,
    • Ida Moltke,
    • Adam Roth,
    • Stefan Washietl,
    • Jiayu Wen,
    • Manolis Kellis,
    • Ronald Breaker,
    • and Jakob Skou Pedersen
    Genome Res. November 2011 21: 1929-1943; Published in Advance October 12, 2011, doi:10.1101/gr.112516.110
    ..., including 48 families with known structural RNA elements. Known families identified include both noncoding RNAs, e.g., miRNAs and the recently identified MALAT1/MEN β lincRNA family; and cis -regulatory structures, e.g., iron-responsive elements. We also identify tens of new families supported...
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