Searching journal content for articles similar to Stong et al. 24 (6): 1039.

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  1. Method: High-throughput single-molecule telomere characterization
    • Jennifer McCaffrey,
    • Eleanor Young,
    • Katy Lassahn,
    • Justin Sibert,
    • Steven Pastor,
    • Harold Riethman,
    • and Ming Xiao
    Genome Res. November 2017 27: 1904-1915; Published in Advance October 12, 2017, doi:10.1101/gr.222422.117
    .... 2007; Xiao et al. 2007; Das et al. 2010) must differentiate individual subtelomeres, and the telomere labeling must be specific and proportional to (TTAGGG)n tract lengths. Nt.BspQI, which has been used widely to nick-label (GCTCTTC) sites wide for large single-molecule-based whole- map assemblies...
  2. Research: The motif composition of variable number tandem repeats impacts gene expression
    • Tsung-Yu Lu,
    • Paulina N. Smaruj,
    • Geoffrey Fudenberg,
    • Nicholas Mancuso,
    • and Mark J.P. Chaisson
    Genome Res. April 2023 33: 511-524; Published in Advance April 10, 2023, doi:10.1101/gr.276768.122
    ..., including FLG. Although it is expected that repeat expansion of the HRNR exon leads to a higher read count, HRNR repeat expansions were associated with reduced expression of FLG-AS1 and FLG. Given that one CTCF binding site (ENCODE ID: EH38E1384952) was annotated on GRCh38 and the critical role of CTCF...
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  3. Method: Haplotype diversity and sequence heterogeneity of human telomeres
    • Kirill Grigorev,
    • Jonathan Foox,
    • Daniela Bezdan,
    • Daniel Butler,
    • Jared J. Luxton,
    • Jake Reed,
    • Miles J. McKenna,
    • Lynn Taylor,
    • Kerry A. George,
    • Cem Meydan,
    • Susan M. Bailey,
    • and Christopher E. Mason
    Genome Res. July 2021 31: 1269-1279; Published in Advance June 23, 2021, doi:10.1101/gr.274639.120
    ...of dendrograms by objective methods. Taxon 11: 33–40. doi:10.2307/1217208 ↵Stong N, Deng Z, Gupta R, Hu S, Paul S, Weiner AK, Eichler EE, Graves T, Fronick CC, Courtney L, et al. 2014. Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline...
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  4. Research: Sister chromatid telomere fusions, but not NHEJ-mediated inter-chromosomal telomere fusions, occur independently of DNA ligases 3 and 4
    • Kate Liddiard,
    • Brian Ruis,
    • Taylor Takasugi,
    • Adam Harvey,
    • Kevin E. Ashelford,
    • Eric A. Hendrickson,
    • and Duncan M. Baird
    Genome Res. May 2016 26: 588-600; Published in Advance March 3, 2016, doi:10.1101/gr.200840.115
    ...(Abu-Odeh et al. 2014), as well as the inhibition of cell division of genetically unstable cells (Bunz Figure 2. Development of targeted nucleases to induce DSBs and fusions at the 17p telomere. (A, left) Schematic depicting the subtelomeric region of the 17p Chromosome arm with TALEN target site...
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