Searching journal content for articles similar to Stepankiw et al. 33 (11): 1865.

Displaying results 1-10 of 82

For checked items

view abstracts
download to citation manager

Select this article
Research: A prospective trial comparing programmable targeted long-read sequencing and short-read genome sequencing for genetic diagnosis of cerebellar ataxia
- Haloom Rafehi,
- Liam G. Fearnley,
- Justin Read,
- Penny Snell,
- Kayli C. Davies,
- Liam Scott,
- Greta Gillies,
- Genevieve C. Thompson,
- Tess A. Field,
- Aleena Eldo,
- Simon Bodek,
- Ernest Butler,
- Luke Chen,
- John Drago,
- Himanshu Goel,
- Anna Hackett,
- G. Michael Halmagyi,
- Andrew Hannaford,
- Katya Kotschet,
- Kishore R. Kumar,
- Smitha Kumble,
- Matthew Lee-Archer,
- Abhishek Malhotra,
- Mark Paine,
- Michael Poon,
- Kate Pope,
- Katrina Reardon,
- Steven Ring,
- Anne Ronan,
- Matthew Silsby,
- Renee Smyth,
- Chloe Stutterd,
- Mathew Wallis,
- John Waterston,
- Thomas Wellings,
- Kirsty West,
- Christine Wools,
- Kathy H.C. Wu,
- David J. Szmulewicz,
- Martin B. Delatycki,
- Melanie Bahlo,
- and Paul J. Lockhart
Genome Res. April 2025 35: 769-785; Published in Advance February 27, 2025, doi:10.1101/gr.279634.124
..., Victoria 3065, Australia; 19Molecular Medicine Laboratory and Neurology Department, Concord Repatriation General Hospital, Concord, New South Wales 2139, Australia; 20Faculty of Medicine and Health, The University of Sydney, Camperdown, New South Wales 2050, Australia; 21Genomics and Inherited Disease...
Select this article
Research: Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species
- Charles Plessy,
- Michael J. Mansfield,
- Aleksandra Bliznina,
- Aki Masunaga,
- Charlotte West,
- Yongkai Tan,
- Andrew W. Liu,
- Jan Grašič,
- María Sara del Río Pisula,
- Gaspar Sánchez-Serna,
- Marc Fabrega-Torrus,
- Alfonso Ferrández-Roldán,
- Vittoria Roncalli,
- Pavla Navratilova,
- Eric M. Thompson,
- Takeshi Onuma,
- Hiroki Nishida,
- Cristian Cañestro,
- and Nicholas M. Luscombe
Genome Res. March 2024 34: 426-440; Published in Advance April 15, 2024, doi:10.1101/gr.278295.123
...ancestor of metazoans (Simakov et al. 2022). The most famous example of conserved microsynteny in animals is the Hox cluster, which contains genes that regulate axial patterning during embryogenesis and whose ancestry can be traced back to the origin of bilaterian animals hundreds of millions of years ago...
OPEN ACCESS ARTICLE
Select this article
Resource: The western redcedar genome reveals low genetic diversity in a self-compatible conifer
- Tal J. Shalev,
- Omnia Gamal El-Dien,
- Macaire M.S. Yuen,
- Shu Shengqiang,
- Shaun D. Jackman,
- René L. Warren,
- Lauren Coombe,
- Lise van der Merwe,
- Ada Stewart,
- Lori B. Boston,
- Christopher Plott,
- Jerry Jenkins,
- Guifen He,
- Juying Yan,
- Mi Yan,
- Jie Guo,
- Jesse W. Breinholt,
- Leandro G. Neves,
- Jane Grimwood,
- Loren H. Rieseberg,
- Jeremy Schmutz,
- Inanc Birol,
- Matias Kirst,
- Alvin D. Yanchuk,
- Carol Ritland,
- John H. Russell,
- and Joerg Bohlmann
Genome Res. October 2022 32: 1952-1964; Published in Advance September 15, 2022, doi:10.1101/gr.276358.121
...of single-copy genes from the Embryophtya database (1614 models) present in the .Genome annotationFor Pacific Biosciences (PacBio) Iso-Seq, full-length cDNAs were synthesized from total RNA. We then generated transcript assemblies from 1.4 billion 2 × 150 and 50 million 2 × 100 stranded paired-end Illumina...
OPEN ACCESS ARTICLE
Select this article
Research: Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome
- Cai Li,
- Boris Lenhard,
- and Nicholas M. Luscombe
Genome Res. May 2018 28: 676-688; Published in Advance April 4, 2018, doi:10.1101/gr.231449.117
...TSS groups defined by sequence age using genomic alignments. (Bottom) Phylogeny with colors indicating the corresponding evolutionary age of each group. OWA = Old World anthropoids. (B) Example BAAT locus containing two “mammalian” TSSs (“old”; red shade) and one “OWA” TSS (“young”; cyan shade). (Top...
OPEN ACCESS ARTICLE
Select this article
Research: Whole-genome sequencing of Atacama skeleton shows novel mutations linked with dysplasia
- Sanchita Bhattacharya,
- Jian Li,
- Alexandra Sockell,
- Matthew J. Kan,
- Felice A. Bava,
- Shann-Ching Chen,
- María C. Ávila-Arcos,
- Xuhuai Ji,
- Emery Smith,
- Narges B. Asadi,
- Ralph S. Lachman,
- Hugo Y.K. Lam,
- Carlos D. Bustamante,
- Atul J. Butte,
- and Garry P. Nolan
Genome Res. April 2018 28: 423-431; Published in Advance March 22, 2018, doi:10.1101/gr.223693.117
...important gene variants from more than 2.7 million good-quality SNV with a stepwise reductionist approach using the ANNOVAR pipeline (Wang et al. 2010). In short, we filtered for nonsynonymous and splicing exonic variants, as well as segmental duplication regions; preserved variants in conserved genomic...
OPEN ACCESS ARTICLE
Select this article
Research: Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition
- Scott A. Lujan,
- Anders R. Clausen,
- Alan B. Clark,
- Heather K. MacAlpine,
- David M. MacAlpine,
- Ewa P. Malc,
- Piotr A. Mieczkowski,
- Adam B. Burkholder,
- David C. Fargo,
- Dmitry A. Gordenin,
- and Thomas A. Kunkel
Genome Res. November 2014 24: 1751-1764; Published in Advance September 12, 2014, doi:10.1101/gr.178335.114
...Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition Scott A. Lujan 1 , 2 , Anders R. Clausen 1 , 2 , Alan B. Clark 1 , 2 , Heather K. MacAlpine 3 , David M. MacAlpine 3 , Ewa...
Select this article
Resource: The genome of the pear (Pyrus bretschneideri Rehd.)
- Jun Wu,
- Zhiwen Wang,
- Zebin Shi,
- Shu Zhang,
- Ray Ming,
- Shilin Zhu,
- M. Awais Khan,
- Shutian Tao,
- Schuyler S. Korban,
- Hao Wang,
- Nancy J. Chen,
- Takeshi Nishio,
- Xun Xu,
- Lin Cong,
- Kaijie Qi,
- Xiaosan Huang,
- Yingtao Wang,
- Xiang Zhao,
- Juyou Wu,
- Cao Deng,
- Caiyun Gou,
- Weili Zhou,
- Hao Yin,
- Gaihua Qin,
- Yuhui Sha,
- Ye Tao,
- Hui Chen,
- Yanan Yang,
- Yue Song,
- Dongliang Zhan,
- Juan Wang,
- Leiting Li,
- Meisong Dai,
- Chao Gu,
- Yuezhi Wang,
- Daihu Shi,
- Xiaowei Wang,
- Huping Zhang,
- Liang Zeng,
- Danman Zheng,
- Chunlei Wang,
- Maoshan Chen,
- Guangbiao Wang,
- Lin Xie,
- Valpuri Sovero,
- Shoufeng Sha,
- Wenjiang Huang,
- Shujun Zhang,
- Mingyue Zhang,
- Jiangmei Sun,
- Linlin Xu,
- Yuan Li,
- Xing Liu,
- Qingsong Li,
- Jiahui Shen,
- Junyi Wang,
- Robert E. Paull,
- Jeffrey L. Bennetzen,
- Jun Wang,
- and Shaoling Zhang
Genome Res. February 2013 23: 396-408; Published in Advance November 13, 2012, doi:10.1101/gr.144311.112
...of eudicots to the ancestor of Rosaceae has reconstructed nine ancestral chromosomes. Pear and apple diverged from each other ∼5.4–21.5 million years ago, and a recent whole-genome duplication (WGD) event must have occurred 30–45 MYA prior to their divergence, but following divergence from strawberry. When...
OPEN ACCESS ARTICLE
Select this article
PERSPECTIVE: The canine genome
- Elaine A. Ostrander and
- Robert K. Wayne
Genome Res. December 2005 15: 1706-1716; doi:10.1101/gr.3736605
...The canine genome Elaine A. Ostrander 1 , 3 and Robert K. Wayne 2 1 Cancer Genetics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA 2 Department of Ecology and Evolutionary...
Select this article
Research: Genome methylation in D. melanogaster is found at specific short motifs and is independent of DNMT2 activity
- Sachiko Takayama,
- Joseph Dhahbi,
- Adam Roberts,
- Guanxiong Mao,
- Seok-Jin Heo,
- Lior Pachter,
- David I.K. Martin,
- and Dario Boffelli
Genome Res. May 2014 24: 821-830; Published in Advance February 20, 2014, doi:10.1101/gr.162412.113
...per kilobase of exon per million fragments mapped (FPKM) for the 600 genes with a high density of methylated regions, and 32.9 FPKM for the 8490 genes without methylation, corresponding to a 23% lower expression of genes containing methylated regions (P = 0.049, Wilcoxon two-sided test). Gene Ontology...
Select this article
Resource: Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations
- Wenyu Zhang,
- Anja Guenther,
- Yuanxiao Gao,
- Kristian Ullrich,
- Bruno Huettel,
- Aftab Ahmad,
- Lei Duan,
- Kaizong Wei,
- and Diethard Tautz
Genome Res. November 2024 34: 2118-2132; Published in Advance September 17, 2024, doi:10.1101/gr.279166.124
...Differences, Max Planck Institute for Evolutionary Biology, Ploen 24306, Germany; 5School of Mathematics and Data Science, Shaanxi University of Science and Technology, Xi'an 710021, China; 6Max-Planck-Genome-Centre Cologne, MPI for Plant Breeding Research, Cologne 50829, Germany Corresponding authors...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Stepankiw et al. 33 (11): 1865.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: