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Method: Pooled analysis of radiation hybrids identifies loci for growth and drug action in mammalian cells
- Arshad H. Khan,
- Andy Lin,
- Richard T. Wang,
- Joshua S. Bloom,
- Kenneth Lange,
- and Desmond J. Smith
Genome Res. October 2020 30: 1458-1467; Published in Advance September 2, 2020, doi:10.1101/gr.262204.120
.... 1975. Mammalian somatic hybrids and human gene mapping. Ann Intern Med 83: 553–560. doi:10.7326/0003-4819-83-4-553 ↵Kwitek AE, Gullings-Handley J, Yu J, Carlos DC, Orlebeke K, Nie J, Eckert J, Lemke A, Andrae JW, Bromberg S, et al. 2004. High-density rat radiation hybrid maps containing over 24...
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RESOURCE: Generation of a High-Density Rat EST Map
- Todd E. Scheetz,
- Michael R. Raymond,
- Darryl Y. Nishimura,
- Ann McClain,
- Chad Roberts,
- Clay Birkett,
- Jack Gardiner,
- Jie Zhang,
- Nichole Butters,
- Christine Sun,
- Anne Kwitek-Black,
- Howard Jacob,
- Thomas L. Casavant,
- M. Bento Soares,
- and Val C. Sheffield
Genome Res. March 1, 2001 11: 497-502; Published in Advance February 8, 2001, doi:10.1101/gr.151601
.... ↵ Steen R.G. , Kwitek-Black A.E. , Glenn C. , Guillings-Handley J. , Van Etten W. , Atkinson O.S. , Appel D. , Twigger S. , Muir M. , Mull T. , et al. ( 1999 ) A high density integrated genetic and radiation hybrid map of the laboratory rat. Genome Res. 9 : AP1 – 8 . ↵ Watanabe T.K. , Bihoreau M.T. , Mc...
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RESOURCE: High-Density Rat Radiation Hybrid Maps Containing Over 24,000 SSLPs, Genes, and ESTs Provide a Direct Link to the Rat Genome Sequence
- Anne E. Kwitek,
- Jo Gullings-Handley,
- Jiaming Yu,
- Danilo C. Carlos,
- Kimberly Orlebeke,
- Jeff Nie,
- Jeffrey Eckert,
- Angela Lemke,
- Jaime Wendt Andrae,
- Susan Bromberg,
- Dean Pasko,
- Dan Chen,
- Todd E. Scheetz,
- Thomas L. Casavant,
- M. Bento Soares,
- Val C. Sheffield,
- Peter J. Tonellato,
- and Howard J. Jacob
Genome Res. April 2004 14: 750-757; doi:10.1101/gr.1968704
...by electronic PCR. Genome Res. 7 : 541 -550. ↵ Steen, R.G., Kwitek-Black, A.E., Glenn, C., Gullings-Handley, J., Van Etten, W., Atkinson, O.S., Appel, D., Twigger, S., Muir, M., Mull, T., et al. 1999 . A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat. Genome Res. 9 : AP1...
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METHODS: Automated Construction of High-Density Comparative Maps Between Rat, Human, and Mouse
- Anne E. Kwitek,
- Peter J. Tonellato,
- Dan Chen,
- Jo Gullings-Handley,
- Yongjian Samuel Cheng,
- Simon Twigger,
- Todd E. Scheetz,
- Thomas L. Casavant,
- Monika Stoll,
- Marcelo A. Nobrega,
- Masahide Shiozawa,
- M. Bento Soares,
- Val C. Sheffield,
- and Howard J. Jacob
Genome Res. November 1, 2001 11: 1935-1943; doi:10.1101/gr.173701
...of radiation hybrid (RH) maps, coupled with the large numbers of available Expressed Sequence Tags (ESTs), has revolutionized the way comparative maps can be built. We used publicly available rat, mouse, and human data to identify genes and ESTs with interspecies sequence identity (homology), identified...
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RESOURCE: The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences
- Neil Hukriede,
- Dan Fisher,
- Jonathan Epstein,
- Lucille Joly,
- Patricia Tellis,
- Yi Zhou,
- Brad Barbazuk,
- Kristine Cox,
- Laura Fenton-Noriega,
- Candace Hersey,
- Jennifer Miles,
- Xiaoming Sheng,
- Anhua Song,
- Rick Waterman,
- Stephen L. Johnson,
- Igor B. Dawid,
- Mario Chevrette,
- Leonard I. Zon,
- John McPherson,
- and Marc Ekker
Genome Res. December 1, 2001 11: 2127-2132; Published in Advance November 12, 2001, doi:10.1101/gr.210601
.... View larger version: In this window In a new window Figure 1. Two linkage groups of the LN54 radiation hybrid (RH) map. Framework markers are shown in black; placement markers, in blue. View this table: In this window In a new window Table 1. Distribution of Mapped ESTs/Genes per Linkage Group After...
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RESOURCE: The Comprehensive Mouse Radiation Hybrid Map Densely Cross-Referenced to the Recombination Map: A Tool to Support the Sequence Assemblies
- Lucy B. Rowe,
- Mary E. Barter,
- Jennifer A. Kelmenson,
- and Janan T. Eppig
Genome Res. January 1, 2003 13: 122-133; Published in Advance December 30, 2002, doi:10.1101/gr.858103
..., Bar Harbor, Maine 04609, USA Abstract We have developed a unique comprehensive mouse radiation hybrid (RH) map of nearly 23,000 markers integrating data from three international genome centers and over 400 independent laboratories. We have cross-referenced this map to the 0.5-cM resolution...
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LETTER: A Radiation Hybrid Map of the Cat Genome: Implications for Comparative Mapping
- William J. Murphy,
- Shan Sun,
- Zhang-qun Chen,
- Naoya Yuhki,
- Deborah Hirschmann,
- Marilyn Menotti-Raymond,
- and Stephen J. O'Brien
Genome Res. May 1, 2000 10: 691-702; doi:10.1101/gr.10.5.691
.... , et al. ( 1999 ) A high-density integrated genetic linkage and radiation hybrid map of the laboratory rat. Genome Res. 9 : AP1 – AP8 . ↵ Stewart E.A. , McKusick K.B. , Aggarwal A. , Bajorek E. , Brady S. , Chu A. , Fang N. , Hadley D. , Harris M. , Hussain S. , et al. ( 1997 ) An STS-based radiation...
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RESEARCH: A Linkage Map of the Rat Genome Derived from Three F₂ Crosses
- Marie Thérèse Bihoreau,
- Dominique Gauguier,
- Norihiro Kato,
- Gina Hyne,
- Klaus Lindpaintner,
- John P. Rapp,
- Michael R. James,
- and G. Mark Lathrop
Genome Res. May 1, 1997 7: 434-440; doi:10.1101/gr.7.5.434
...of Ohio, Toledo, Ohio 43699-0008 Abstract We report the construction of a dense linkage map of the rat genome integrating 767 simple sequence length polymorphism markers, combined over three crosses with high rates of polymorphism. F2 populations from WKY × S ( n = 159), BN × S ( n = 91...
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RESOURCE: Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
- Martin Krzywinski,
- John Wallis,
- Claudia Gösele,
- Ian Bosdet,
- Readman Chiu,
- Tina Graves,
- Oliver Hummel,
- Dan Layman,
- Carrie Mathewson,
- Natasja Wye,
- Baoli Zhu,
- Derek Albracht,
- Jennifer Asano,
- Sarah Barber,
- Mabel Brown-John,
- Susanna Chan,
- Steve Chand,
- Alison Cloutier,
- Jonathon Davito,
- Chris Fjell,
- Tony Gaige,
- Detlev Ganten,
- Noreen Girn,
- Kurtis Guggenheimer,
- Heinz Himmelbauer,
- Thomas Kreitler,
- Stephen Leach,
- Darlene Lee,
- Hans Lehrach,
- Michael Mayo,
- Kelly Mead,
- Teika Olson,
- Pawan Pandoh,
- Anna-Liisa Prabhu,
- Heesun Shin,
- Simone Tänzer,
- Jason Thompson,
- Miranda Tsai,
- Jason Walker,
- George Yang,
- Mandeep Sekhon,
- LaDeana Hillier,
- Heike Zimdahl,
- Andre Marziali,
- Kazutoyo Osoegawa,
- Shaying Zhao,
- Asim Siddiqui,
- Pieter J. de Jong,
- Wes Warren,
- Elaine Mardis,
- John D. McPherson,
- Richard Wilson,
- Norbert Hübner,
- Steven Jones,
- Marco Marra,
- and Jacqueline Schein
Genome Res. April 2004 14: 766-779; doi:10.1101/gr.2336604
...loci within the rat . Radiation Hybrid Mapping Individual IRS-PCR markers were screened against the rat T55 whole- radiation hybrid (RH) panel, consisting of 106 rat-on-hamster somatic hybrid cell lines ( Watanabe et al. 1999 ). The observed average marker retention frequency of 28.9% is consistent...
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Commentary: Every genome sequence needs a good map
- Harris A. Lewin,
- Denis M. Larkin,
- Joan Pontius,
- and Stephen J. O'Brien
Genome Res. November 2009 19: 1925-1928; Published in Advance July 13, 2009, doi:10.1101/gr.094557.109
..., Gullings-Handley J, Yu J, Carlos DC, Orlebeke K, Nie J, Eckert J, Lemke A, Andrae JW, Bromberg S, et al. 2004. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat sequence. Genome Res 14: 750–757. Larkin DM, Everts-van der Wind A, Rebeiz M...

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