Searching journal content for articles similar to Sigalova et al. 35 (5): 1138.

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  1. Method: The oligogenic inheritance test GCOD detects risk genes and their interactions in congenital heart defects
    • Maureen Pittman,
    • Kihyun Lee,
    • Franco Felix,
    • Yu Huang,
    • Adrienne Lam,
    • Mauro W. Costa,
    • Deepak Srivastava,
    • and Katherine S. Pollard
    Genome Res. February 2026 36: 330-347; Published in Advance December 12, 2025, doi:10.1101/gr.281141.125
    ...these difficulties, there are existing methods that scan the for possible oligogenic disease combinations. ORVAL accepts a small list of variants as input and provides gene and variant annotations to a predictor that assesses potential oligogenic combinations (Renaux et al. 2019; Versbraegen et al. 2023). Similarly...
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  2. Research: Aberrant homeodomain–DNA cooperative dimerization underlies distinct developmental defects in two dominant CRX retinopathy models
    • Yiqiao Zheng,
    • Gary D. Stormo,
    • and Shiming Chen
    Genome Res. February 2025 35: 242-256; Published in Advance December 23, 2024, doi:10.1101/gr.279340.124
    ...progenitor programs. Our study provides in vitro and in vivo molecular evidence that paired-class HD cooperative dimerization regulates neuronal development and that dysregulation of cooperative binding contributes to severe dominant blinding retinopathies.Homeodomain (HD) transcription factors (TFs...
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  3. Method: Latent feature extraction with a prior-based self-attention framework for spatial transcriptomics
    • Zhen Li,
    • Xiaoyang Chen,
    • Xuegong Zhang,
    • Rui Jiang,
    • and Shengquan Chen
    Genome Res. October 2023 33: 1757-1773; Published in Advance October 30, 2023, doi:10.1101/gr.277891.123
    ...transcriptomics (PAST), a variational graph convolutional autoencoder for ST, which effectively integrates prior information via a Bayesian neural network, captures spatial patterns via a self-attention mechanism, and enables scalable application via a ripple walk sampler strategy. Through comprehensive...
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