Searching journal content for articles similar to Shoguchi et al. 16 (2): 297.

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  1. Methods: Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi
    • Jong Hyun Kim,
    • Michael S. Waterman,
    • and Lei M. Li
    Genome Res. July 2007 17: 1101-1110; Published in Advance June 13, 2007, doi:10.1101/gr.5894107
    ...artificial chromosomes (BACs). Mate-pair information is exploited to extend haplotypes beyond an assembled contig. We selected the Ciona intestinalis to infer haplotypes from a real assembly because its reported polymorphism rate (1.2%) was high and the libraries were mostly prepared from a single individual...
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  2. RESOURCE: The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution
    • Matthew M. Hill,
    • Karl W. Broman,
    • Elia Stupka,
    • William C. Smith,
    • Di Jiang,
    • and Arend Sidow
    Genome Res. August 2008 18: 1369-1379; Published in Advance June 2, 2008, doi:10.1101/gr.078576.108
    .... Eighty-three percent of the reference genome sequence is covered. The chromosomal reconstruction allowed us to investigate the evolution of genome structure in highly polymorphic species, by comparing the genome of C. savignyi to its divergent sister species, Ciona intestinalis . Both genomes have...
  3. ARTICLE: Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates
    • Yoichiro Nakatani,
    • Hiroyuki Takeda,
    • Yuji Kohara,
    • and Shinichi Morishita
    Genome Res. September 2007 17: 1254-1265; Published in Advance July 25, 2007, doi:10.1101/gr.6316407
    .... Genet. Dev. 13 : 636 – 643 . ↵ Shoguchi, E. , Kawashima, T. , Satou, Y. , Hamaguchi, M. , Sin-I, T. , Kohara, Y. , Putnam, N. , Rokhsar, D.S. , Satoh, N. ( 2006 ) Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis . Genome Res...
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