Searching journal content for articles similar to Sherill-Rofe et al. 29 (3): 439.

Displaying results 1-10 of 13
For checked items
  1. Resource: The fine-scale recombination rate variation and associations with genomic features in a butterfly
    • Aleix Palahí i Torres,
    • Lars Höök,
    • Karin Näsvall,
    • Daria Shipilina,
    • Christer Wiklund,
    • Roger Vila,
    • Peter Pruisscher,
    • and Niclas Backström
    Genome Res. May 2023 33: 810-823; Published in Advance June 12, 2023, doi:10.1101/gr.277414.122
    ...). Recombination rate usually varies considerably across chromosomes and genomic regions, and mapping this variation may shed light on the mechanistic control of where recombination is initiated. The reasons for such regional recombination rate variation have been studied in detail in a few organism groups...
    OPEN ACCESS ARTICLE
  2. RESOURCE: Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi
    • Michael J. Cornell,
    • Intikhab Alam,
    • Darren M. Soanes,
    • Han Min Wong,
    • Cornelia Hedeler,
    • Norman W. Paton,
    • Magnus Rattray,
    • Simon J. Hubbard,
    • Nicholas J. Talbot,
    • and Stephen G. Oliver
    Genome Res. December 2007 17: 1809-1822; Published in Advance November 5, 2007, doi:10.1101/gr.6531807
    ...Comparative genome analysis across a kingdom of eukaryotic organisms: Specialization and diversification in the Fungi Michael J. Cornell 1 , 2 , Intikhab Alam 1 , Darren M. Soanes 3 , Han Min Wong 3 , Cornelia Hedeler 1 , Norman W...
    OPEN ACCESS ARTICLE
  3. Research: Crossover-active regions of the wheat genome are distinguished by DMC1, the chromosome axis, H3K27me3, and signatures of adaptation
    • Andrew J. Tock,
    • Daniel M. Holland,
    • Wei Jiang,
    • Kim Osman,
    • Eugenio Sanchez-Moran,
    • James D. Higgins,
    • Keith J. Edwards,
    • Cristobal Uauy,
    • F. Chris H. Franklin,
    • and Ian R. Henderson
    Genome Res. September 2021 31: 1614-1628; Published in Advance August 23, 2021, doi:10.1101/gr.273672.120
    ...-response and immunity annotations, have higher sequence polymorphism, and exhibit signatures of selection. Our findings are consistent with meiotic recombination promoting genetic diversity, shaping host–pathogen co-evolution, and accelerating adaptation by increasing the efficiency of selection.Meiosis is a germ...
  4. Review: The structure, function, and evolution of plant centromeres
    • Matthew Naish and
    • Ian R. Henderson
    Genome Res. February 2024 34: 161-178; Published in Advance March 14, 2024, doi:10.1101/gr.278409.123
    ...change of centromere sequences observed across species, including the potential roles of recombination. We outline putative modes of selection that could act within the centromeres, as well as the role of repeats in driving cycles of centromere evolution. Although our primary focus is on plant s, we draw...
    OPEN ACCESS ARTICLE
  5. Research: The genomic basis of evolutionary differentiation among honey bees
    • Bertrand Fouks,
    • Philipp Brand,
    • Hung N. Nguyen,
    • Jacob Herman,
    • Francisco Camara,
    • Daniel Ence,
    • Darren E. Hagen,
    • Katharina J. Hoff,
    • Stefanie Nachweide,
    • Lars Romoth,
    • Kimberly K.O. Walden,
    • Roderic Guigo,
    • Mario Stanke,
    • Giuseppe Narzisi,
    • Mark Yandell,
    • Hugh M. Robertson,
    • Nikolaus Koeniger,
    • Panuwan Chantawannakul,
    • Michael C. Schatz,
    • Kim C. Worley,
    • Gene E. Robinson,
    • Christine G. Elsik,
    • and Olav Rueppell
    Genome Res. July 2021 31: 1203-1215; Published in Advance May 4, 2021, doi:10.1101/gr.272310.120
    ...whether this selective signature should be interpreted as a cause or consequence of the high recombination rates, but mutations in genes involved in DSB repair can lead to higher homologous recombination rates (Aguilera and Gómez-González 2008). The accelerated molecular evolution of DSB repair genes may...
    OPEN ACCESS ARTICLE
  6. Research: Hybridization drives mitochondrial DNA degeneration and metabolic shift in a species with biparental mitochondrial inheritance
    • Mathieu Hénault,
    • Souhir Marsit,
    • Guillaume Charron,
    • and Christian R. Landry
    Genome Res. November/December 2022 32: 2043-2056; Published in Advance November 9, 2022, doi:10.1101/gr.276885.122
    ...sequence divergence between mtDNAs is also expected to reduce the opportunities for homologous recombination. Little is known about the path to heteroplasmy resolution in hybrids and its consequences for hybrid evolution. Although the study of s sampled from natural populations yielded important insights...
  7. Research: De novo transcriptome assembly of mouse male germ cells reveals novel genes, stage-specific bidirectional promoter activity, and noncoding RNA expression
    • Mark E. Gill,
    • Alexia Rohmer,
    • Serap Erkek-Ozhan,
    • Ching-Yeu Liang,
    • Sunwoo Chun,
    • Evgeniy A. Ozonov,
    • and Antoine H.F.M. Peters
    Genome Res. December 2023 33: 2060-2078; Published in Advance December 21, 2023, doi:10.1101/gr.278060.123
    ..., a wide variety of processes occur requiring distinctive transcriptional programs and regulation (Fig. 1A). In early meiotic prophase, DNA double-strand breaks (DSBs) are formed as a necessary intermediate for meiotic recombination and the subsequent reductional chromosome division during meiosis I...
    OPEN ACCESS ARTICLE
  8. Research: The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
    • Yue Hao,
    • Makenzie E. Mabry,
    • Patrick P. Edger,
    • Michael Freeling,
    • Chunfang Zheng,
    • Lingling Jin,
    • Robert VanBuren,
    • Marivi Colle,
    • Hong An,
    • R. Shawn Abrahams,
    • Jacob D. Washburn,
    • Xinshuai Qi,
    • Kerrie Barry,
    • Christopher Daum,
    • Shengqiang Shu,
    • Jeremy Schmutz,
    • David Sankoff,
    • Michael S. Barker,
    • Eric Lyons,
    • J. Chris Pires,
    • and Gavin C. Conant
    Genome Res. May 2021 31: 799-810; Published in Advance April 16, 2021, doi:10.1101/gr.270033.120
    ...the pillars across the four hexaploid s, using their A. thaliana homologs as indices. We then sought a global pillar order that minimized the number of synteny breaks across all of the hexaploid s (Supplemental Fig. S2). These three steps resulted in a set of 14,050 ordered pillars, each with at least one...
    OPEN ACCESS ARTICLE
  9. Research: The origins and evolution of chromosomes, dosage compensation, and mechanisms underlying venom regulation in snakes
    • Drew R. Schield,
    • Daren C. Card,
    • Nicole R. Hales,
    • Blair W. Perry,
    • Giulia M. Pasquesi,
    • Heath Blackmon,
    • Richard H. Adams,
    • Andrew B. Corbin,
    • Cara F. Smith,
    • Balan Ramesh,
    • Jeffery P. Demuth,
    • Esther Betrán,
    • Marc Tollis,
    • Jesse M. Meik,
    • Stephen P. Mackessy,
    • and Todd A. Castoe
    Genome Res. April 2019 29: 590-601; Published in Advance March 21, 2019, doi:10.1101/gr.240952.118
    ...”) that shows near-autosomal female genomic read coverage (Fig. 2A, top panel). We hypothesize that recombination was most recently suppressed in this region and that substantial homology is retained between Z and W Chromosomes. Consistent with this hypothesis, we observe elevated nucleotide diversity (π...
  10. Resource: The Proteome Folding Project: Proteome-scale prediction of structure and function
    • Kevin Drew,
    • Patrick Winters,
    • Glenn L. Butterfoss,
    • Viktors Berstis,
    • Keith Uplinger,
    • Jonathan Armstrong,
    • Michael Riffle,
    • Erik Schweighofer,
    • Bill Bovermann,
    • David R. Goodlett,
    • Trisha N. Davis,
    • Dennis Shasha,
    • Lars Malmström,
    • and Richard Bonneau
    Genome Res. November 2011 21: 1981-1994; Published in Advance August 8, 2011, doi:10.1101/gr.121475.111
    ...fragments of proteins from the PDB to generate local structure during a Monte Carlo optimization that then produces ensembles of low-energy protein conformations. The Rosetta de novo protocol does not require homology with a solved structure in the PDB and is thus theoretically applicable to all protein...
    OPEN ACCESS ARTICLE
For checked items

Search Results

Next 3 » New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. April 2026, 36 (4)
  1. Current Issue
  1. Alert me to new issues of Genome Research