Searching journal content for articles similar to Shen et al. 21 (9): 1478.

Displaying results 1-10 of 11

For checked items

view abstracts
download to citation manager

Select this article
Resource: Genome-wide dynamics of alternative polyadenylation in rice
- Haihui Fu,
- Dewei Yang,
- Wenyue Su,
- Liuyin Ma,
- Yingjia Shen,
- Guoli Ji,
- Xinfu Ye,
- Xiaohui Wu,
- and Qingshun Q. Li
Genome Res. December 2016 26: 1753-1760; Published in Advance October 12, 2016, doi:10.1101/gr.210757.116
...: 3150–3161. Shen Y, VenuRC,Nobuta K,WuX,Notibala V,Demirci C,Meyers BC,Wang GL, Ji G, Li QQ. 2011. Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. Genome Res 21: 1478–1486. Shepard PJ, Choi EA, Lu J, Flanagan...
Select this article
Resource: Full-length RNA transcript sequencing traces brain isoform diversity in house mouse natural populations
- Wenyu Zhang,
- Anja Guenther,
- Yuanxiao Gao,
- Kristian Ullrich,
- Bruno Huettel,
- Aftab Ahmad,
- Lei Duan,
- Kaizong Wei,
- and Diethard Tautz
Genome Res. November 2024 34: 2118-2132; Published in Advance September 17, 2024, doi:10.1101/gr.279166.124
...isoforms from the same gene increases vastly the complexity of the transcriptome and proteome in eukaryotes (Keren et al. 2010; Nilsen and Graveley 2010). Alternative isoforms with different coding sequences can be generated through multiple types of alternative splicing (AS) events (Naftaly et al. 2021...
Select this article
Research: SWATH-MS-based proteogenomic analysis reveals the involvement of alternative splicing in poplar upon lead stress
- Fu-Yuan Zhu,
- Xin Chen,
- Yu-Chen Song,
- Lydia Pui Ying Lam,
- Yuki Tobimatsu,
- Bei Gao,
- Mo-Xian Chen,
- and Fu-Liang Cao
Genome Res. March 2023 33: 371-385; Published in Advance March 24, 2023, doi:10.1101/gr.277473.122
...to other plants, is needed.In the transcriptomic landscape, alternative splicing (AS) is regarded as an important mechanism for increasing the coding capacity of s (James et al. 2012; Rühl et al. 2012). Its identification and characterization in plants are widely considered a milestone to understanding...
Select this article
Research: Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
- Guojie Zhang,
- Guangwu Guo,
- Xueda Hu,
- Yong Zhang,
- Qiye Li,
- Ruiqiang Li,
- Ruhong Zhuang,
- Zhike Lu,
- Zengquan He,
- Xiaodong Fang,
- Li Chen,
- Wei Tian,
- Yong Tao,
- Karsten Kristiansen,
- Xiuqing Zhang,
- Songgang Li,
- Huanming Yang,
- Jian Wang,
- and Jun Wang
Genome Res. May 2010 20: 646-654; Published in Advance March 19, 2010, doi:10.1101/gr.100677.109
...Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome Guojie Zhang 1 , 2 , 6 , Guangwu Guo 1 , 6 , Xueda Hu 1 , 6 , Yong Zhang 1 , 6 , Qiye Li 1 , 3 , Ruiqiang Li 1 , 4...
Select this article
Resource: A comparative transcriptional landscape of maize and sorghum obtained by single-molecule sequencing
- Bo Wang,
- Michael Regulski,
- Elizabeth Tseng,
- Andrew Olson,
- Sara Goodwin,
- W. Richard McCombie,
- and Doreen Ware
Genome Res. June 2018 28: 921-932; Published in Advance April 30, 2018, doi:10.1101/gr.227462.117
...alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing. Genome Res 21: 1478–1486. Simpson GG, Dijkwel PP, Quesada V, Henderson I, Dean C. 2003. FY is an RNA 3′ end-processing factor that interacts with FCA to control the Arabidopsis floral transition...
OPEN ACCESS ARTICLE
Select this article
Resource: Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq
- Vincent M. Bruno,
- Zhong Wang,
- Sadie L. Marjani,
- Ghia M. Euskirchen,
- Jeffrey Martin,
- Gavin Sherlock,
- and Michael Snyder
Genome Res. October 2010 20: 1451-1458; Published in Advance September 1, 2010, doi:10.1101/gr.109553.110
...M, Schulz MH, Richard H, Magen A, Klingenhoff A, Scherf M, Seifert M, Borodina T, Soldatov A, Parkhomchuk D, et al. 2008. A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321: 956–960. Trapnell C, Pachter L, Salzberg SL. 2009. Top...
OPEN ACCESS ARTICLE
Select this article
Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
- Andrew D. Bates,
- Dawid Grzela,
- Maciej Studzian,
- Louise Brennan,
- Moli Williams,
- Conor Fawcett,
- Beth Hammond,
- Manreen Grewal,
- Marcin Ratajewski,
- Lukasz Pulaski,
- and Urszula L. McClurg
Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
...of regulation by DNA methylation, depending on factors such as cell type, developmental stage, and environmental conditions (Gardiner-Garden and Frommer 1987; Jaenisch and Bird 2003; Illingworth and Bird 2009; Loyfer et al. 2023). CG-rich sequences are predominantly found in the 5′-flanking regions of genes...
OPEN ACCESS ARTICLE
Select this article
Research: Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock
- Akanksha Bafna,
- Gareth Banks,
- Michael H. Hastings,
- and Patrick M. Nolan
Genome Res. May 2023 33: 673-688; Published in Advance May 8, 2023, doi:10.1101/gr.277581.122
...to environmental and cell-autonomous stimuli. It also highlights the possibility of the same enhancer site being active at a distinct time of day to regulate the subsequent tissue-specific gene expression.View larger version: In this window In a new window Figure 3. Dynamic H3K27ac occupancy based on time...
OPEN ACCESS ARTICLE
Select this article
Research: Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas
- Jonas Kjellin,
- Lotta Avesson,
- Johan Reimegård,
- Zhen Liao,
- Ludwig Eichinger,
- Angelika Noegel,
- Gernot Glöckner,
- Pauline Schaap,
- and Fredrik Söderbom
Genome Res. March 2021 31: 436-447; Published in Advance January 21, 2021, doi:10.1101/gr.272856.120
...the other two identical Class I RNAs, DfiR-12 and DdR-50, could not be properly assessed because of the lack of available sequence surrounding DfiR-12.Class I RNAs are unique to dictyostelid social amoebasThe omnipresence of Class I RNAs within Dictyostelia, their developmental regulation, as well...
OPEN ACCESS ARTICLE
Select this article
Research: Broad domains of histone marks in the highly compact Paramecium macronuclear genome
- Franziska Drews,
- Abdulrahman Salhab,
- Sivarajan Karunanithi,
- Miriam Cheaib,
- Martin Jung,
- Marcel H. Schulz,
- and Martin Simon
Genome Res. April 2022 32: 710-725; Published in Advance March 9, 2022, doi:10.1101/gr.276126.121
...RNAs as histone modifications influence Pol II dynamics and its interaction with RNA modifying components, such as the capping enzyme or the spliceosome.Paramecium tetraurelia is a unicellular organism belonging to the SAR clade (including Stramenophiles, alveolates, and Rhizaria), which is as distant to plants...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Shen et al. 21 (9): 1478.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: