Searching journal content for articles similar to She et al. 19 (1): 143.

Displaying results 1-3 of 3
For checked items
  1. Research: Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly
    • Kang Du,
    • Oliver Deusch,
    • Ilja Bezrukov,
    • Christa Lanz,
    • Yann Guiguen,
    • Margarete Hoffmann,
    • Anette Habring,
    • Detlef Weigel,
    • Manfred Schartl,
    • and Christine Dreyer
    Genome Res. March 2025 35: 489-498; Published in Advance March 5, 2025, doi:10.1101/gr.279582.124
    ...(GCF_000633615.1). We aligned the protein sequences to the assembly using Exonerate (https://github.com/nathanweeks/exonerate) and GeneWise (Birney et al. 2004), respectively, to predict gene location and intron/exon structures. To speed up GeneWise, we used genBlastA to roughly locate the alignment...
    OPEN ACCESS ARTICLE
  2. Method: Identifying genes within pathways in unannotated genomes with PaGeSearch
    • Sohyoung Won,
    • Jaewoong Yu,
    • and Heebal Kim
    Genome Res. May 2024 34: 784-795; Published in Advance June 10, 2024, doi:10.1101/gr.278566.123
    ...of the gene in question.To tackle these issues, alternative tools like genBlastA (She et al. 2009) and genBlastG (She et al. 2011) were developed to enhance the identification of homologous genes from BLAST search results. genBlastA uses a graph-based algorithm to filter high-scoring pairs (HSPs) into well...
    OPEN ACCESS ARTICLE
  3. Resource: RNA-seq analysis of the C. briggsae transcriptome
    • Bora Uyar,
    • Jeffrey S.C. Chu,
    • Ismael A. Vergara,
    • Shu Yi Chua,
    • Martin R. Jones,
    • Tammy Wong,
    • David L. Baillie,
    • and Nansheng Chen
    Genome Res. August 2012 22: 1567-1580; Published in Advance July 6, 2012, doi:10.1101/gr.134601.111
    ..., Reannotation of the C. briggsae Genome Research 1575 www..org genBlastA predicts genomic regions that contain a candidate homologous gene, while genBlastG defines the homologous gene model based on similarity between the query gene and the target gene. This effort resulted in revising 6715 C. briggsae gene...
For checked items

Search Results

New Search

Modify Results

Citation format:
Results / page:
Results order:

This search

  • Alert me when new articles matching this search are published
  • Download all citations on this page to my citation manager

Preprint Server



Current Issue

  1. March 2026, 36 (3)
  1. Current Issue
  1. Alert me to new issues of Genome Research