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Erratum: Erratum: Proving sequence aligners can guarantee accuracy in almost O(m log n) time through an average-case analysis of the seed-chain-extend heuristic
- Jim Shaw and
- Yun William Yu
Genome Res. May 2024 34: 810; doi:10.1101/gr.279618.124
.... Genome Res 1088-9051 1549-5469 Cold Spring Harbor Laboratory Press 9509184 10.1101/gr.279618.124 ;34/5/810 ;gr.279618.124 810 gr.279618.124 Erratum Erratum Errata Erratum: Proving sequence aligners can guarantee accuracy in almost O ( m log n ) time through an average-case analysis of the seed-chain-extend...
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Method: Haplotype-aware sequence alignment to pangenome graphs
- Ghanshyam Chandra,
- Daniel Gibney,
- and Chirag Jain
Genome Res. September 2024 34: 1265-1275; Published in Advance July 16, 2024, doi:10.1101/gr.279143.124
.... An illustration of the pan DAG used in the reduction proof of Lemma 3. An initial version of the DAG (A) and the changes made after addition of all the haplotype paths (B).Methods for haplotype-aware chaining on graphsMost alignment tools use a seed-chain-extend heuristic to compute the alignments quickly (Sahlin...

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