Searching journal content for articles similar to Serre and Pääbo 14 (9): 1679.

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  1. Research: Deciphering D4Z4 CpG methylation gradients in fascioscapulohumeral muscular dystrophy using nanopore sequencing
    • Russell J. Butterfield,
    • Diane M. Dunn,
    • Brett Duval,
    • Sarah Moldt,
    • and Robert B. Weiss
    Genome Res. September 2023 33: 1439-1454; Published in Advance October 5, 2023, doi:10.1101/gr.277871.123
    ...indicates that the methylation levels of divergent D4Z4 repeats were uniformly high in the peripheral blood DNA of both FSHD1 and FSHD2 affected participants, as well as unaffected individuals, consistent with previous reports (Zeng et al. 2014).Methylation gradients are seen in other high CpG “continents...
  2. Letter: Geographical structure and differential natural selection among North European populations
    • Brian P. McEvoy,
    • Grant W. Montgomery,
    • Allan F. McRae,
    • Samuli Ripatti,
    • Markus Perola,
    • Tim D. Spector,
    • Lynn Cherkas,
    • Kourosh R. Ahmadi,
    • Dorret Boomsma,
    • Gonneke Willemsen,
    • Jouke J. Hottenga,
    • Nancy L. Pedersen,
    • Patrik K.E. Magnusson,
    • Kirsten Ohm Kyvik,
    • Kaare Christensen,
    • Jaakko Kaprio,
    • Kauko Heikkilä,
    • Aarno Palotie,
    • Elisabeth Widen,
    • Juha Muilu,
    • Ann-Christine Syvänen,
    • Ulrika Liljedahl,
    • Orla Hardiman,
    • Simon Cronin,
    • Leena Peltonen,
    • Nicholas G. Martin,
    • and Peter M. Visscher
    Genome Res. May 2009 19: 804-814; Published in Advance March 5, 2009, doi:10.1101/gr.083394.108
    ...Geographical structure and differential natural selection among North European populations Brian P. McEvoy 1 , 17 , Grant W. Montgomery 1 , Allan F. McRae 1 , Samuli Ripatti 2 , 3 , 4 , Markus Perola 2 , 3 , Tim D. Spector 5...
  3. LETTER: Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms
    • W. Scott Watkins,
    • Alan R. Rogers,
    • Christopher T. Ostler,
    • Steve Wooding,
    • Michael J. Bamshad,
    • Anna-Marie E. Brassington,
    • Marion L. Carroll,
    • Son V. Nguyen,
    • Jerilyn A. Walker,
    • B.V. Ravi Prasad,
    • P. Govinda Reddy,
    • Pradipta K. Das,
    • Mark A. Batzer,
    • and Lynn B. Jorde
    Genome Res. July 2003 13: 1607-1618; Published in Advance June 12, 2003, doi:10.1101/gr.894603
    ...Genetic Variation Among World Populations: Inferences From 100 Alu Insertion Polymorphisms W. Scott Watkins 1 , Alan R. Rogers 2 , Christopher T. Ostler 1 , Steve Wooding 1 , Michael J. Bamshad 1 , 3 , Anna-Marie E. Brassington 1...
  4. Research: Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
    • Gang Li,
    • Brian W. Davis,
    • Eduardo Eizirik,
    • and William J. Murphy
    Genome Res. January 2016 26: 1-11; Published in Advance October 30, 2015, doi:10.1101/gr.186668.114
    .... Distinguishing historical hybridization events from other processes leading to phylogenetic discordance among different markers requires a well-resolved species tree that considers all modes of inheritance and overcomes systematic problems due to rapid lineage diversification by sampling large genomic character...
  5. Letter: Global distribution of genomic diversity underscores rich complex history of continental human populations
    • Adam Auton,
    • Katarzyna Bryc,
    • Adam R. Boyko,
    • Kirk E. Lohmueller,
    • John Novembre,
    • Andy Reynolds,
    • Amit Indap,
    • Mark H. Wright,
    • Jeremiah D. Degenhardt,
    • Ryan N. Gutenkunst,
    • Karen S. King,
    • Matthew R. Nelson,
    • and Carlos D. Bustamante
    Genome Res. May 2009 19: 795-803; Published in Advance February 13, 2009, doi:10.1101/gr.088898.108
    ...India; and elucidating a north–south gradient in haplotype diversity within Europe. We also present a novel method for identifying long-range tracts of homozygosity indicative of recent common ancestry. Application of our approach suggests great variation within and among populations in the extent...
  6. Letter: Fine-scaled human genetic structure revealed by SNP microarrays
    • Jinchuan Xing,
    • W. Scott Watkins,
    • David J. Witherspoon,
    • Yuhua Zhang,
    • Stephen L. Guthery,
    • Rangaswamy Thara,
    • Bryan J. Mowry,
    • Kazima Bulayeva,
    • Robert B. Weiss,
    • and Lynn B. Jorde
    Genome Res. May 2009 19: 815-825; doi:10.1101/gr.085589.108
    .... The final data set consists of 243,855 autosomal loci genotyped in 554 individuals from 27 populations (see Methods for details of SNP selection criteria). Genetic diversity among populations and continental groups To compare genetic diversity among major continental regions, we grouped the 27 populations...
  7. LETTER: Mitochondrial Genome Variation and Evolutionary History of Australian and New Guinean Aborigines
    • Max Ingman and
    • Ulf Gyllensten
    Genome Res. July 2003 13: 1600-1606; doi:10.1101/gr.686603
    ...sequences form clades, suggesting the possibility of a joint colonization and/or admixture between the two regions. The continent of Australia has been separate from Asia since the late Cretaceous, approximately 70 million years ago. However, lower sea levels during the upper Pleistocene merged the Malay...
  8. Research: Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast
    • Daniel A. Skelly,
    • Gennifer E. Merrihew,
    • Michael Riffle,
    • Caitlin F. Connelly,
    • Emily O. Kerr,
    • Marnie Johansson,
    • Daniel Jaschob,
    • Beth Graczyk,
    • Nicholas J. Shulman,
    • Jon Wakefield,
    • Sara J. Cooper,
    • Stanley Fields,
    • William S. Noble,
    • Eric G.D. Muller,
    • Trisha N. Davis,
    • Maitreya J. Dunham,
    • Michael J. MacCoss,
    • and Joshua M. Akey
    Genome Res. September 2013 23: 1496-1504; Published in Advance May 29, 2013, doi:10.1101/gr.155762.113
    ...and metabolite abundance, and quantitative morphological phenotypes in isolates of S. cerevisiae sampled from six continents and a wide variety of microenvironments (Supplemental Table 1). Although previous studies have reported measurements of one or two of these data types in samples derived from a smaller...
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  9. Resource: GenGIS: A geospatial information system for genomic data
    • Donovan H. Parks,
    • Michael Porter,
    • Sylvia Churcher,
    • Suwen Wang,
    • Christian Blouin,
    • Jacqueline Whalley,
    • Stephen Brooks,
    • and Robert G. Beiko
    Genome Res. October 2009 19: 1896-1904; Published in Advance July 27, 2009, doi:10.1101/gr.095612.109
    ...that indicate the ecological or phylogenetic similarity among samples collected from different sites. A key principle in the construction of these trees is the use of a geographic axis to define hypotheses that follow geographic gradients: for instance, mapping the leaf nodes of a tree to a linear geographic...
  10. Letter: Global diversity in the human salivary microbiome
    • Ivan Nasidze,
    • Jing Li,
    • Dominique Quinque,
    • Kun Tang,
    • and Mark Stoneking
    Genome Res. April 2009 19: 636-643; Published in Advance February 27, 2009, doi:10.1101/gr.084616.108
    ...are present. There is high diversity in the salivary microbiome within and between individuals, but little geographic structure. Overall, ∼13.5% of the total variance in the composition of genera is due to differences among individuals, which is remarkably similar to the fraction of the total variance...
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