Searching journal content for articles similar to Sepehri and Hernandez 7 (10): 1006.

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  1. Research: A multiplicity of factors contributes to selective RNA polymerase III occupancy of a subset of RNA polymerase III genes in mouse liver
    • Donatella Canella,
    • David Bernasconi,
    • Federica Gilardi,
    • Gwendal LeMartelot,
    • Eugenia Migliavacca,
    • Viviane Praz,
    • Pascal Cousin,
    • Mauro Delorenzi,
    • Nouria Hernandez,
    • and The CycliX Consortium
    Genome Res. April 2012 22: 666-680; Published in Advance January 27, 2012, doi:10.1101/gr.130286.111
    ...-linked chromatin from each set of five livers was pooled and used as starting material for immunoprecipitations with antibodies directed against POLR3A (RPC1) and POLR3D (RPC4), two RNAP-III subunits, POLR2B (RPB2), the second largest RNAP-II subunit, as well as histone H3 trimethylated on lysine 4 (H3K4me3...
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  2. LETTER: Analysis of the VSG gene silent archive in Trypanosoma brucei reveals that mosaic gene expression is prominent in antigenic variation and is favored by archive substructure
    • Lucio Marcello and
    • J. David Barry
    Genome Res. September 2007 17: 1344-1352; Published in Advance July 25, 2007, doi:10.1101/gr.6421207
    .... 1982 ). PCR analysis revealed that about half of the 10 tested VR sequences are present in genomic DNA from three other T. brucei strains ( Fig. 4A ). To test whether VR s have different expression control from that of VSG s, which yield mRNA in bloodstream stage trypanosomes in a clone...
  3. Resource: A systematic analysis of Trypanosoma brucei chromatin factors identifies novel protein interaction networks associated with sites of transcription initiation and termination
    • Desislava P. Staneva,
    • Roberta Carloni,
    • Tatsiana Auchynnikava,
    • Pin Tong,
    • Juri Rappsilber,
    • A. Arockia Jeyaprakash,
    • Keith R. Matthews,
    • and Robin C. Allshire
    Genome Res. November 2021 31: 2138-2154; Published in Advance August 18, 2021, doi:10.1101/gr.275368.121
    ...that overlap with tRNA and/or snRNA genes and also at the single TTR6 (sTTR6), which lacks such genes (Fig. 5A,B). We detected, consistent with T. brucei snRNA and tRNA genes being transcribed by RNAPIII (Nakaar et al. 1997; Tschudi and Ullu 2002), enrichment of RPC1 (the largest RNAPIII subunit...
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  4. ARTICLE: Phylogenetic Analysis of Ribonuclease H Domains Suggests a Late, Chimeric Origin of LTR Retrotransposable Elements and Retroviruses
    • Harmit S. Malik and
    • Thomas H. Eickbush
    Genome Res. July 1, 2001 11: 1187-1197; doi:10.1101/gr.185101
    ...the two subunits, and the connection domain in the p51 subunit makes close contact with the tRNA primer annealed to the viral RNA template ( Kohlstaedt et al. 1992 ). Finally, the connection domain may even play a role in the incorporation of protein in the virus particle. Mutations in the connection...
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