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Corrigendum: Corrigendum: Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks
- Endre Sebestyén,
- Babita Singh,
- Belén Miñana,
- Amadís Pagès,
- Francesca Mateo,
- Miguel Angel Pujana,
- Juan Valcárcel,
- and Eduardo Eyras
Genome Res. September 2018 28: 1426; doi:10.1101/gr.242214.118
...Corrigendum: Large-scale analysis of and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks Endre Sebestyén, Babita Singh, Belén Miñana, Amadís Pagès, Francesca Mateo, Miguel Angel Pujana, Juan Valcárcel and Eduardo Eyras Genome Research 26: 732–744 (2016...
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Resource: An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms
- Javier Tapial,
- Kevin C.H. Ha,
- Timothy Sterne-Weiler,
- André Gohr,
- Ulrich Braunschweig,
- Antonio Hermoso-Pulido,
- Mathieu Quesnel-Vallières,
- Jon Permanyer,
- Reza Sodaei,
- Yamile Marquez,
- Luca Cozzuto,
- Xinchen Wang,
- Melisa Gómez-Velázquez,
- Teresa Rayon,
- Miguel Manzanares,
- Julia Ponomarenko,
- Benjamin J. Blencowe,
- and Manuel Irimia
Genome Res. October 2017 27: 1759-1768; Published in Advance August 30, 2017, doi:10.1101/gr.220962.117
...alterations in multiple tumors unveils novel cancer-relevant splicing networks. Genome Res 26: 732–744. Shalgi R, Hurt JA, Lindquist S, Burge CB. 2014. Widespread inhibition of posttranscriptional splicing shapes the cellular transcriptome following heat shock. Cell Rep 7: 1362–1370. Shen S, Park JW, Lu ZX...
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Research: DDX54 regulates transcriptome dynamics during DNA damage response
- Miha Milek,
- Koshi Imami,
- Neelanjan Mukherjee,
- Francesca De Bortoli,
- Ulrike Zinnall,
- Orsalia Hazapis,
- Christian Trahan,
- Marlene Oeffinger,
- Florian Heyd,
- Uwe Ohler,
- Matthias Selbach,
- and Markus Landthaler
Genome Res. August 2017 27: 1344-1359; Published in Advance June 8, 2017, doi:10.1101/gr.218438.116
...2016). Several recent large-scale proteomic studies have reported that RNA processing and translation factors are post-translationally modified by DDR signaling (Matsuoka et al. 2007; Bennetzen et al. 2010; Bensimon et al. 2010; Beli et al. 2012; Jungmichel et al. 2013), and many RBPs are essential...
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Research: A human-specific switch of alternatively spliced AFMID isoforms contributes to TP53 mutations and tumor recurrence in hepatocellular carcinoma
- Kuan-Ting Lin,
- Wai Kit Ma,
- Juergen Scharner,
- Yun-Ru Liu,
- and Adrian R. Krainer
Genome Res. March 2018 28: 275-284; Published in Advance February 15, 2018, doi:10.1101/gr.227181.117
...E, Singh B, Minana B, Pages A, Mateo F, Pujana MA, Valcarcel J, Eyras E. 2016. Large-scale analysis of and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks. Genome Res 26: 732–744. ↵Shields DJ, Agellon LB, Vance DE. 2001. Structure, expression profile...
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Resource: Identification of protein features encoded by alternative exons using Exon Ontology
- Léon-Charles Tranchevent,
- Fabien Aubé,
- Louis Dulaurier,
- Clara Benoit-Pilven,
- Amandine Rey,
- Arnaud Poret,
- Emilie Chautard,
- Hussein Mortada,
- François-Olivier Desmet,
- Fatima Zahra Chakrama,
- Maira Alejandra Moreno-Garcia,
- Evelyne Goillot,
- Stéphane Janczarski,
- Franck Mortreux,
- Cyril F. Bourgeois,
- and Didier Auboeuf
Genome Res. June 2017 27: 1087-1097; Published in Advance April 18, 2017, doi:10.1101/gr.212696.116
...-level functional annotations. This strategy allowed us to characterize individual and coregulated protein features impacted by alternative splicing of exons that are differentially spliced between epithelial and mesenchymal cells. Results Exon Ontology tree and exon annotation Large-scale RNA sequencing...
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