Searching journal content for articles similar to Schnall-Levin et al. 21 (9): 1395.

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  1. Resource: Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression
    • Ni-Chen Chang,
    • Quirze Rovira,
    • Jonathan Wells,
    • Cédric Feschotte,
    • and Juan M. Vaquerizas
    Genome Res. July 2022 32: 1408-1423; Published in Advance January 5, 2022, doi:10.1101/gr.275655.121
    ...been shown to be the source of new protein coding exons, RNA-binding motifs, and microRNA target sites (Lev-Maor et al. 2003; Zarnack et al. 2013; Petri et al. 2019; Cosby et al. 2021). Our analyses reveal that DNA transposon transcription is more often gene-dependent than retroelement transcription...
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  2. Research: Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation
    • Jean Hausser,
    • Afzal Pasha Syed,
    • Biter Bilen,
    • and Mihaela Zavolan
    Genome Res. April 2013 23: 604-615; Published in Advance January 18, 2013, doi:10.1101/gr.139758.112
    ...are more efficient at triggering mRNA degradation. Our study suggests that miRNAs may combine targeting of CDS and 39 UTR to flexibly tune the time scale and magnitude of their post-transcriptional regulatory effects. [Supplemental material is available for this article.] MicroRNAs (miRNAs) are ;21 nt...
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  3. Platypus Special/Letter: Conservation of small RNA pathways in platypus
    • Elizabeth P. Murchison,
    • Pouya Kheradpour,
    • Ravi Sachidanandam,
    • Carly Smith,
    • Emily Hodges,
    • Zhenyu Xuan,
    • Manolis Kellis,
    • Frank Grützner,
    • Alexander Stark,
    • and Gregory J. Hannon
    Genome Res. June 2008 18: 995-1004; Published in Advance May 7, 2008, doi:10.1101/gr.073056.107
    ...conserved microRNA species display their signature tissue-specific expression patterns. In addition, we find a large rapidly evolving cluster of microRNAs on platypus chromosome X1, which is unique to monotremes. Platypus and echidna testes contain a robust Piwi-interacting (piRNA) system, which appears...
  4. Research: Global analysis reveals multiple pathways for unique regulation of mRNA decay in induced pluripotent stem cells
    • Ashley T. Neff,
    • Ju Youn Lee,
    • Jeffrey Wilusz,
    • Bin Tian,
    • and Carol J. Wilusz
    Genome Res. August 2012 22: 1457-1467; Published in Advance April 25, 2012, doi:10.1101/gr.134312.111
    ...protein mRNAs, potentially through reduced levels of miRNAs that target them. Finally, a group of transcripts bearing 3′ UTR C-rich sequence elements, many of which encode transcription factors, are significantly less stable in iPS cells. Intriguingly, two poly(C)-binding proteins that recognize this type...
  5. Method: Structure-based whole-genome realignment reveals many novel noncoding RNAs
    • Sebastian Will,
    • Michael Yu,
    • and Bonnie Berger
    Genome Res. June 2013 23: 1018-1027; Published in Advance January 7, 2013, doi:10.1101/gr.137091.111
    ...to proteins, in many cases mediated by their distinct stable and evolutionarily conserved structure. Prominent examples are structural precursors to small microRNAs (miRNAs) (Lagos-Quintana et al. 2001; Lau et al. 2001; Schnall-Levin et al. 2010, 2011), structural meso-sized RNAs (200 or fewer bases...
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