Searching journal content for articles similar to Schmitz et al. 18 (6): 1005.

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  1. LETTER: Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)
    • Maren Krull,
    • Mirjan Petrusma,
    • Wojciech Makalowski,
    • Jürgen Brosius,
    • and Jürgen Schmitz
    Genome Res. August 2007 17: 1139-1145; Published in Advance July 10, 2007, doi:10.1101/gr.6320607
    ...regarding their contribution to protein plasticity. Good candidates for illuminating these older exonization processes are the retroposed mammalian-wide interspersed repeat (MIR) elements. MIR elements amplified ∼130 million years ago (Mya), and they number, for example, in human, ∼368,000 discernible...
  2. Platypus Special/Letter: Conservation of small RNA pathways in platypus
    • Elizabeth P. Murchison,
    • Pouya Kheradpour,
    • Ravi Sachidanandam,
    • Carly Smith,
    • Emily Hodges,
    • Zhenyu Xuan,
    • Manolis Kellis,
    • Frank Grützner,
    • Alexander Stark,
    • and Gregory J. Hannon
    Genome Res. June 2008 18: 995-1004; Published in Advance May 7, 2008, doi:10.1101/gr.073056.107
    ...and fish than of mammals. The platypus is a specialized semiaquatic carnivore that displays several unique features. Its leathery bill is equipped with specialized neurons, which serve as electrosensors, and male platypuses have spikes on their hind legs, which are used in an elaborate venom delivery...
  3. LETTER: Retroposed New Genes Out of the X in Drosophila
    • Esther Betrán,
    • Kevin Thornton,
    • and Manyuan Long
    Genome Res. December 1, 2002 12: 1854-1859; Published in Advance November 12, 2002, doi:10.1101/gr.604902
    ...Retroposed New Genes Out of the X in Drosophila Esther Betrán 1 , Kevin Thornton 2 , and Manyuan Long 1 , 2 , 3 1 Department of Ecology and Evolution; 2 Committee on Genetics, The University of Chicago, Chicago, Illinois 60637, USA...
  4. Platypus Special/Letter: Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes
    • Frédéric Veyrunes,
    • Paul D. Waters,
    • Pat Miethke,
    • Willem Rens,
    • Daniel McMillan,
    • Amber E. Alsop,
    • Frank Grützner,
    • Janine E. Deakin,
    • Camilla M. Whittington,
    • Kyriena Schatzkamer,
    • Colin L. Kremitzki,
    • Tina Graves,
    • Malcolm A. Ferguson-Smith,
    • Wes Warren,
    • and Jennifer A. Marshall Graves
    Genome Res. June 2008 18: 965-973; Published in Advance May 7, 2008, doi:10.1101/gr.7101908
    ...Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes Frédéric Veyrunes 1 , 2 , 6 , Paul D. Waters 1 , 6 , 7 , Pat Miethke 1 , Willem Rens 2 , Daniel McMillan 1 , Amber E. Alsop 1 , Frank...
  5. Platypus Special/Letter: Defensins and the convergent evolution of platypus and reptile venom genes
    • Camilla M. Whittington,
    • Anthony T. Papenfuss,
    • Paramjit Bansal,
    • Allan M. Torres,
    • Emily S.W. Wong,
    • Janine E. Deakin,
    • Tina Graves,
    • Amber Alsop,
    • Kyriena Schatzkamer,
    • Colin Kremitzki,
    • Chris P. Ponting,
    • Peter Temple-Smith,
    • Wesley C. Warren,
    • Philip W. Kuchel,
    • and Katherine Belov
    Genome Res. June 2008 18: 986-994; Published in Advance May 7, 2008, doi:10.1101/gr.7149808
    ...through a bite, as do snakes and shrews, male platypuses have venomous spurs on each hind leg. The platypus genome sequence provides a unique opportunity to unravel the evolutionary history of many of these interesting features. While searching the platypus genome for the sequences of antimicrobial...
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  6. Research: Motif conservation, stability, and host gene expression are the main drivers of snoRNA expression across vertebrates
    • Étienne Fafard-Couture,
    • Pierre-Étienne Jacques,
    • and Michelle S. Scott
    Genome Res. April 2023 33: 525-540; Published in Advance April 18, 2023, doi:10.1101/gr.277483.122
    ...of all snoRNA copies (with the extreme case of the platypus, which was reported to have more than 40,000 full or truncated snoRNA copies, most being located in suboptimal genomic context) (Schmitz et al. 2008).Another interesting avenue following snoRNA integration in a locus is the development of new...
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  7. LETTER: Retroposed Copies of the HMG Genes: A Window to Genome Dynamics
    • Liora Z. Strichman-Almashanu,
    • Michael Bustin,
    • and David Landsman
    Genome Res. May 1, 2003 13: 800-812; doi:10.1101/gr.893803
    ...Retroposed Copies of the HMG Genes: A Window to Genome Dynamics Liora Z. Strichman-Almashanu 1 , Michael Bustin 2 , and David Landsman 1 , 3 1Computational Biology Branch, National Center for Biotechnology Information, National Library...
  8. Research: DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts
    • Teresa Szczepińska,
    • Katarzyna Kalisiak,
    • Rafal Tomecki,
    • Anna Labno,
    • Lukasz S. Borowski,
    • Tomasz M. Kulinski,
    • Dorota Adamska,
    • Joanna Kosinska,
    • and Andrzej Dziembowski
    Genome Res. November 2015 25: 1622-1633; Published in Advance August 20, 2015, doi:10.1101/gr.189597.115
    ...in misregulation of expression of ∼50% of transcribed protein-coding genes, probably as a secondary effect of accumulation of various noncoding RNA species. Finally, cells expressing mutant DIS3 accumulated snoRNA precursors, which correlated with a strong PAR-CLIP signal, indicating that DIS3 is the main snoRNA...
  9. Method: Genome-wide characterization of centromeric satellites from multiple mammalian genomes
    • Can Alkan,
    • Maria Francesca Cardone,
    • Claudia Rita Catacchio,
    • Francesca Antonacci,
    • Stephen J. O'Brien,
    • Oliver A. Ryder,
    • Stefania Purgato,
    • Monica Zoli,
    • Giuliano Della Valle,
    • Evan E. Eichler,
    • and Mario Ventura
    Genome Res. January 2011 21: 137-145; Published in Advance November 16, 2010, doi:10.1101/gr.111278.110
    ...elements correspond to functional centromeric sequences. We analyzed genome datasets from six species of mammals representing the diversity of the mammalian lineage, namely, horse, dog, elephant, armadillo, opossum, and platypus. We define candidate monomer satellite repeats and demonstrate centromeric...
  10. Letter: Extreme variability among mammalian V1R gene families
    • Janet M. Young,
    • Hillary F. Massa,
    • Li Hsu,
    • and Barbara J. Trask
    Genome Res. January 2010 20: 10-18; Published in Advance December 1, 2009, doi:10.1101/gr.098913.109
    ...show that species-specific expansions previously observed in only eight species were prevalent throughout mammalian evolution, resulting in “semi-private” V1R repertoires for most mammals. The largest families are found in mouse and platypus, whose V1R repertoires have been published previously...
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