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METHODS: Automated Construction of High-Density Comparative Maps Between Rat, Human, and Mouse
- Anne E. Kwitek,
- Peter J. Tonellato,
- Dan Chen,
- Jo Gullings-Handley,
- Yongjian Samuel Cheng,
- Simon Twigger,
- Todd E. Scheetz,
- Thomas L. Casavant,
- Monika Stoll,
- Marcelo A. Nobrega,
- Masahide Shiozawa,
- M. Bento Soares,
- Val C. Sheffield,
- and Howard J. Jacob
Genome Res. November 1, 2001 11: 1935-1943; doi:10.1101/gr.173701
...Automated Construction of High-Density Comparative Maps Between Rat, Human, and Mouse Anne E. Kwitek 1 , 3 , 8 , Peter J. Tonellato 2 , 3 , Dan Chen 2 , Jo Gullings-Handley 1 , Yongjian Samuel Cheng 2 , Simon Twigger 2 , 3...
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RESOURCE: High-Density Rat Radiation Hybrid Maps Containing Over 24,000 SSLPs, Genes, and ESTs Provide a Direct Link to the Rat Genome Sequence
- Anne E. Kwitek,
- Jo Gullings-Handley,
- Jiaming Yu,
- Danilo C. Carlos,
- Kimberly Orlebeke,
- Jeff Nie,
- Jeffrey Eckert,
- Angela Lemke,
- Jaime Wendt Andrae,
- Susan Bromberg,
- Dean Pasko,
- Dan Chen,
- Todd E. Scheetz,
- Thomas L. Casavant,
- M. Bento Soares,
- Val C. Sheffield,
- Peter J. Tonellato,
- and Howard J. Jacob
Genome Res. April 2004 14: 750-757; doi:10.1101/gr.1968704
...High-Density Rat Radiation Hybrid Maps Containing Over 24,000 SSLPs, Genes, and ESTs Provide a Direct Link to the Rat Genome Sequence Anne E. Kwitek 1 , 5 , Jo Gullings-Handley 1 , Jiaming Yu 1 , Danilo C. Carlos 1 , 2 , Kimberly Orlebeke 1...
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RESEARCH: A High-Density Integrated Genetic Linkage and Radiation Hybrid Map of the Laboratory Rat
- Robert G. Steen,
- Anne E. Kwitek-Black,
- Christopher Glenn,
- Jo Gullings-Handley,
- William Van Etten,
- O. Scott Atkinson,
- Diane Appel,
- Simon Twigger,
- Melanie Muir,
- Tim Mull,
- Mary Granados,
- Mushira Kissebah,
- Kerri Russo,
- Robbin Crane,
- Michael Popp,
- Marc Peden,
- Tara Matise,
- Donna M. Brown,
- Jian Lu,
- Stephen Kingsmore,
- Peter J. Tonellato,
- Steve Rozen,
- Donna Slonim,
- Peter Young,
- Margit Knoblauch,
- Abraham Provoost,
- Detlev Ganten,
- Steven D. Colman,
- Jonathan Rothberg,
- Eric S. Lander,
- and Howard J. Jacob
Genome Res. June 1, 1999 9: AP1-AP8; Published in Advance May 21, 1999, doi:10.1101/gr.9.6.AP1
...A High-Density Integrated Genetic Linkage and Radiation Hybrid Map of the Laboratory Rat Robert G. Steen 1 , 8 , Anne E. Kwitek-Black 2 , 8 , Christopher Glenn 3 , 8 , Jo Gullings-Handley 2 , William Van Etten 1 , O. Scott Atkinson...
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RESOURCE: Integration of the Rat Recombination and EST Maps in the Rat Genomic Sequence and Comparative Mapping Analysis With the Mouse Genome
- Steven P. Wilder,
- Marie-Thérèse Bihoreau,
- Karène Argoud,
- Takeshi K. Watanabe,
- Mark Lathrop,
- and Dominique Gauguier
Genome Res. April 2004 14: 758-765; doi:10.1101/gr.2001604
...: Cutting tools for complex immune disorders. Nat. Rev. Immunol. 3 : 243 -252. ↵ Scheetz, T.E., Raymond, M.R., Nishimura, D.Y., McClain, A., Roberts, C., Birkett, C., Gardiner, J., Zhang, J., Butters, N., Sun, C., et al. 2001 . Generation of a high-density rat EST map. Genome Res. 11 : 497 -502. ↵ Schuler...
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RESOURCE: Transcript Mapping and Genome Annotation of Ascidian mtDNA Using EST Data
- Carmela Gissi and
- Graziano Pesole
Genome Res. September 2003 13: 2203-2212; Published in Advance January 1, 2003, doi:10.1101/gr.1227803
...in cDNA libraries obtained from tissue sources with a high density of mitochondria or mtDNA overexpression ( Welle et al. 1999 ; Laveder et al. 2002 ). The nucleotide identity of assembled ESTs to the corresponding mtDNA is higher than 94% in Halocynthia and higher than 99% in Ciona . The small...
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Resource: A spatial and temporal map of C. elegans gene expression
- W. Clay Spencer,
- Georg Zeller,
- Joseph D. Watson,
- Stefan R. Henz,
- Kathie L. Watkins,
- Rebecca D. McWhirter,
- Sarah Petersen,
- Vipin T. Sreedharan,
- Christian Widmer,
- Jeanyoung Jo,
- Valerie Reinke,
- Lisa Petrella,
- Susan Strome,
- Stephen E. Von Stetina,
- Menachem Katz,
- Shai Shaham,
- Gunnar Rätsch,
- and David M. Miller III
Genome Res. February 2011 21: 325-341; Published in Advance December 22, 2010, doi:10.1101/gr.114595.110
...A spatial and temporal map of C. elegans gene expression W. Clay Spencer 1 , 7 , Georg Zeller 2 , 3 , 7 , 8 , Joseph D. Watson 1 , 9 , Stefan R. Henz 3 , Kathie L. Watkins 1 , Rebecca D. McWhirter 1 , Sarah Petersen...
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Commentary: Every genome sequence needs a good map
- Harris A. Lewin,
- Denis M. Larkin,
- Joan Pontius,
- and Stephen J. O'Brien
Genome Res. November 2009 19: 1925-1928; Published in Advance July 13, 2009, doi:10.1101/gr.094557.109
..., Gullings-Handley J, Yu J, Carlos DC, Orlebeke K, Nie J, Eckert J, Lemke A, Andrae JW, Bromberg S, et al. 2004. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat sequence. Genome Res 14: 750–757. Larkin DM, Everts-van der Wind A, Rebeiz M...
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Method: A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes
- Andy Lin,
- Richard T. Wang,
- Sangtae Ahn,
- Christopher C. Park,
- and Desmond J. Smith
Genome Res. August 2010 20: 1122-1132; Published in Advance May 27, 2010, doi:10.1101/gr.104216.109
...A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes Andy Lin 1 , Richard T. Wang 1 , Sangtae Ahn 2 , Christopher C. Park 1 and Desmond J. Smith 1 , 3 1 Department of Molecular and Medical...
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ARTICLE: Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array.
- G Piétu,
- O Alibert,
- V Guichard,
- B Lamy,
- F Bois,
- E Leroy,
- R Mariage-Sampson,
- R Houlgatte,
- P Soularue,
- and C Auffray
Genome Res. June 1996 6: 492-503; doi:10.1101/gr.6.6.492
.... Hybridization fingerprinting of high-density cDNA-library arrays with cDNA pools derived from whole tissues. Mamm. Genome 3 : 609 – 619 . Houlgatte, R., Mariage-Samson, R. Duprat, S. Tessier, A. Bentolila, S. Lamy, B. and Auffray. C. 1995 . The Genexpress Index: A resource for gene discovery and genie map...
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LETTER: Gene Discovery in the Apicomplexa as Revealed by EST Sequencing and Assembly of a Comparative Gene Database
- Li Li,
- Brian P. Brunk,
- Jessica C. Kissinger,
- Deana Pape,
- Keliang Tang,
- Robert H. Cole,
- John Martin,
- Todd Wylie,
- Mike Dante,
- Steven J. Fogarty,
- Daniel K. Howe,
- Paul Liberator,
- Carmen Diaz,
- Jennifer Anderson,
- Michael White,
- Maria E. Jerome,
- Emily A. Johnson,
- Jay A. Radke,
- Christian J. Stoeckert, Jr.,
- Robert H. Waterston,
- Sandra W. Clifton,
- David S. Roos,
- and L. David Sibley
Genome Res. March 1, 2003 13: 443-454; doi:10.1101/gr.693203
....] The generation of expressed sequence tags (ESTs) provides a rapid means of gene discovery from single-pass sequencing of randomly selected cDNAs. This approach has been particularly useful for complex, model s including human ( Hillier et al. 1996 ), rat ( Scheetz et al. 2001 ), mouse ( Marra et al. 1999b...

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