Searching journal content for articles similar to Schalkwyk et al. 11 (12): 2142.

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  1. RESOURCE: Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
    • Martin Krzywinski,
    • John Wallis,
    • Claudia Gösele,
    • Ian Bosdet,
    • Readman Chiu,
    • Tina Graves,
    • Oliver Hummel,
    • Dan Layman,
    • Carrie Mathewson,
    • Natasja Wye,
    • Baoli Zhu,
    • Derek Albracht,
    • Jennifer Asano,
    • Sarah Barber,
    • Mabel Brown-John,
    • Susanna Chan,
    • Steve Chand,
    • Alison Cloutier,
    • Jonathon Davito,
    • Chris Fjell,
    • Tony Gaige,
    • Detlev Ganten,
    • Noreen Girn,
    • Kurtis Guggenheimer,
    • Heinz Himmelbauer,
    • Thomas Kreitler,
    • Stephen Leach,
    • Darlene Lee,
    • Hans Lehrach,
    • Michael Mayo,
    • Kelly Mead,
    • Teika Olson,
    • Pawan Pandoh,
    • Anna-Liisa Prabhu,
    • Heesun Shin,
    • Simone Tänzer,
    • Jason Thompson,
    • Miranda Tsai,
    • Jason Walker,
    • George Yang,
    • Mandeep Sekhon,
    • LaDeana Hillier,
    • Heike Zimdahl,
    • Andre Marziali,
    • Kazutoyo Osoegawa,
    • Shaying Zhao,
    • Asim Siddiqui,
    • Pieter J. de Jong,
    • Wes Warren,
    • Elaine Mardis,
    • John D. McPherson,
    • Richard Wilson,
    • Norbert Hübner,
    • Steven Jones,
    • Marco Marra,
    • and Jacqueline Schein
    Genome Res. April 2004 14: 766-779; doi:10.1101/gr.2336604
    ...Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome Martin Krzywinski 1 , John Wallis 2 , Claudia Gösele 3 , 4 , Ian Bosdet 1 , Readman Chiu 1 , Tina Graves 2 , Oliver Hummel 3 , Dan...
  2. RESEARCH: A Physical Map of Human Chromosome 7: An Integrated YAC Contig Map with Average STS Spacing of 79 kb
    • Gerard G. Bouffard,
    • Jacquelyn R. Idol,
    • Valerie V. Braden,
    • Leslie M. Iyer,
    • Aimee F. Cunningham,
    • Lauren A. Weintraub,
    • Jeffrey W. Touchman,
    • Rose M. Mohr-Tidwell,
    • Dale C. Peluso,
    • Robert S. Fulton,
    • Melinda S. Ueltzen,
    • Jean Weissenbach,
    • Charles L. Magness,
    • and Eric D. Green
    Genome Res. July 1, 1997 7: 673-692; doi:10.1101/gr.7.7.673
    ...(G.G. Bouffard and E.D. Green, unpubl.). Furthermore, STSs developed from the insert ends of several of these BACs have been found to map to orphan YAC contigs, further suggesting that some of the gaps and orphan contigs correspond to regions difficult to clone in YACs. Apparent False...
  3. RESOURCE: Construction of a BAC Contig Map of Chromosome 16q by Two-Dimensional Overgo Hybridization
    • Cliff S. Han,
    • Robert D. Sutherland,
    • Phillip B. Jewett,
    • Mary L. Campbell,
    • Linda J. Meincke,
    • Judy G. Tesmer,
    • Mark O. Mundt,
    • John J. Fawcett,
    • Ung-Jin Kim,
    • Larry L. Deaven,
    • and Norman A. Doggett
    Genome Res. May 1, 2000 10: 714-721; doi:10.1101/gr.10.5.714
    ...Construction and Validation Overgo-content BAC contigs were constructed according to the hybridization results, using the LANL STS–YAC-derived overgos as the framework for ordering. The overgos from other groups were integrated into the map according to the common BACs hybridized. Finally, 53 contigs were...
  4. RESOURCE: A Deep-Coverage Tomato BAC Library and Prospects Toward Development of an STC Framework for Genome Sequencing
    • Muhammad A. Budiman,
    • Long Mao,
    • Todd C. Wood,
    • and Rod A. Wing
    Genome Res. January 1, 2000 10: 129-136; doi:10.1101/gr.10.1.129
    ...) and bacterial artificial chromosomes (BACs), that can be used for physical mapping, positional cloning, and sequencing. The publicly available tomato YAC libraries have served as valuable research tools for the isolation of several agriculturally important genes by positional cloning (e.g., Martin et al. 1993...
  5. RESEARCH: A 1.1-Mb Transcript Map of the Hereditary Hemochromatosis Locus
    • David A. Ruddy,
    • Gregory S. Kronmal,
    • Vincent K. Lee,
    • Gabriel A. Mintier,
    • Leah Quintana,
    • Rodolfo Domingo, Jr.,
    • Nicole C. Meyer,
    • Alivelu Irrinki,
    • Erin E. McClelland,
    • Amy Fullan,
    • Felipa A. Mapa,
    • Theodore Moore,
    • Winston Thomas,
    • Deborah B. Loeb,
    • Cyrus Harmon,
    • Zenta Tsuchihashi,
    • Roger K. Wolff,
    • Randall C. Schatzman,
    • and John N. Feder
    Genome Res. May 1, 1997 7: 441-456; doi:10.1101/gr.7.5.441
    ...for these experiments was a 0.9-Mb yeast artificial chromosome (YAC) y899G1 and a 1.1-Mb large-insert bacterial clone contig ( Lauer et al., this issue ). View larger version: In this window In a new window Figure 1. Combination genetic, physical, and transcription map of the HH candidate gene region. The first line...
  6. LETTER: High-Resolution Landmark Framework for the Sequence-Ready Mapping of Xq23–q26.1
    • Helen E. Steingruber,
    • Andrew Dunham,
    • Alison J. Coffey,
    • Sheila M. Clegg,
    • Gareth R. Howell,
    • Gareth L. Maslen,
    • Carol E. Scott,
    • Rhian Gwilliam,
    • Paul J. Hunt,
    • Elizabeth C. Sotheran,
    • Elizabeth J. Huckle,
    • Sarah E. Hunt,
    • Pawandeep Dhami,
    • Cari Soderlund,
    • Margaret A. Leversha,
    • David R. Bentley,
    • and Mark T. Ross
    Genome Res. August 1, 1999 9: 751-762; doi:10.1101/gr.9.8.751
    ...libraries [(BAC) Shizuya et al. 1992 ; (PAC) Ioannou et al. 1994 ]. There is a need, therefore, to produce higher density framework maps (15–20 markers per Mb) using RH mapping or YACs. The need is particularly acute for the X chromosome, because neither the whole RH maps nor the genetic maps provide...
  7. ARTICLE: A high-fidelity physical map of human chromosome 21q in yeast artificial chromosomes.
    • J R Korenberg,
    • X N Chen,
    • S Mitchell,
    • S Fannin,
    • S Gerwehr,
    • D Cohen,
    • and I Chumakov
    Genome Res. December 1995 5: 427-443; doi:10.1101/gr.5.5.427
    .... They may be utilized as an ordered list with gaps defined by the STSs mapped on chromo- some 21 by single-chromosome hybrids, or PFGE. Alternatively, the data may be used to formulate a YAC array and generate a framework graphic map. The accuracy of the latter depends on the use of nonchimeric, stable YAC...
  8. ARTICLE: A Genetic Linkage Map for Zebrafish: Comparative Analysis and Localization of Genes and Expressed Sequences
    • Michael A. Gates,
    • Lisa Kim,
    • Elizabeth S. Egan,
    • Timothy Cardozo,
    • Howard I. Sirotkin,
    • Scott T. Dougan,
    • Deval Lashkari,
    • Ruben Abagyan,
    • Alexander F. Schier,
    • and William S. Talbot
    Genome Res. April 1, 1999 9: 334-347; doi:10.1101/gr.9.4.334
    .... These polymorphisms included 105 SSCPs from fully sequenced cDNAs and ESTs (of which 104 were mapped, see below) that defined previously unmapped genes (Fig. 1 ; Table 1 ). We also developed SSCPs to map 10 sequence-tagged sites (STSs) derived from genomic clones in BAC, PAC, and YAC vectors and other sequences...
  9. LETTER: A First-Generation Whole Genome–Radiation Hybrid Map Spanning the Mouse Genome
    • Linda C. McCarthy,
    • Jonathan Terrett,
    • Maria E. Davis,
    • Catherine J. Knights,
    • Angela L. Smith,
    • Ricky Critcher,
    • Karin Schmitt,
    • Jim Hudson,
    • Nigel K. Spurr,
    • and Peter N. Goodfellow
    Genome Res. December 1, 1997 7: 1153-1161; doi:10.1101/gr.7.12.1153
    ...models. High-resolution mapping tools are essential to facilitate high-density mapping. Genetic crosses and clone libraries of yeast, bacterial, and P1-derived artificial chromosomes, respectively (YACs, BACs, PACs), and cosmids all offer routes to high-resolution maps but require screening thousands...
  10. LETTER: Bacterial Contig Map of the 21q11 Region Associated with Alzheimer’s Disease and Abnormal Myelopoiesis in Down Syndrome
    • Jürgen Groet,
    • Jane H. Ives,
    • Andrew P. South,
    • Pedro R. Baptista,
    • Tania A. Jones,
    • Marie-Laure Yaspo,
    • Hans Lehrach,
    • Marie-Claude Potier,
    • Christine Van Broeckhoven,
    • and Dean Nižetić
    Genome Res. April 1, 1998 8: 385-398; doi:10.1101/gr.8.4.385
    ...-resolution bacterial contig map. The contigs will be sequenced by the chromosome 21 sequencing project within the framework of the German Human Genome Programme. RESULTS Construction of a PAC-Pocket Sublibrary Enriched for the Region A YAC contig from the integrated cosmid-pocket map published previously ( Nizetic et...
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