Searching journal content for articles similar to Sankoff and Ferretti 6 (1): 1.

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  1. Research: Plant genome evolution in the genus Eucalyptus is driven by structural rearrangements that promote sequence divergence
    • Scott Ferguson,
    • Ashley Jones,
    • Kevin Murray,
    • Rose Andrew,
    • Benjamin Schwessinger,
    • and Justin Borevitz
    Genome Res. April 2024 34: 606-619; Published in Advance April 8, 2024, doi:10.1101/gr.277999.123
    ...rare, duplications were shortest and very common, and translocations occurred at a moderate frequency and size. Syntenic regions are distributed over the entire length of all chromosomes between all pairs; however, synteny has become highly fragmented by rearrangements and unaligned regions...
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  2. Research: Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species
    • Charles Plessy,
    • Michael J. Mansfield,
    • Aleksandra Bliznina,
    • Aki Masunaga,
    • Charlotte West,
    • Yongkai Tan,
    • Andrew W. Liu,
    • Jan Grašič,
    • María Sara del Río Pisula,
    • Gaspar Sánchez-Serna,
    • Marc Fabrega-Torrus,
    • Alfonso Ferrández-Roldán,
    • Vittoria Roncalli,
    • Pavla Navratilova,
    • Eric M. Thompson,
    • Takeshi Onuma,
    • Hiroki Nishida,
    • Cristian Cañestro,
    • and Nicholas M. Luscombe
    Genome Res. March 2024 34: 426-440; Published in Advance April 15, 2024, doi:10.1101/gr.278295.123
    ...for the speciation and adaptations such as mimicry (Joron et al. 2011; Hill et al. 2019; de Vos et al. 2020), mostly owing to reciprocal translocation and repeated events of fusion and fission among a highly dynamic number of chromosomes between species.To better understand the phenomenon of scrambling, we study...
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  3. Research: Synchronized replication of genes encoding the same protein complex in fast-proliferating cells
    • Ying Chen,
    • Ke Li,
    • Xiao Chu,
    • Lucas B. Carey,
    • and Wenfeng Qian
    Genome Res. December 2019 29: 1929-1938; Published in Advance October 29, 2019, doi:10.1101/gr.254342.119
    ..., defined as a karyotype that is not a multiple of the haploid complement, generates dosage imbalance among genes on different chromosomes (Birchler et al. 2001; Chen et al. 2019). Consistent with the balance hypothesis, aneuploidy often results in a more severe growth defect than polyploidy, which keeps...
  4. Research: Transcriptional alterations in glioma result primarily from DNA methylation–independent mechanisms
    • Franck Court,
    • Elisa Le Boiteux,
    • Anne Fogli,
    • Mélanie Müller-Barthélémy,
    • Catherine Vaurs-Barrière,
    • Emmanuel Chautard,
    • Bruno Pereira,
    • Julian Biau,
    • Jean-Louis Kemeny,
    • Toufic Khalil,
    • Lucie Karayan-Tapon,
    • Pierre Verrelle,
    • and Philippe Arnaud
    Genome Res. October 2019 29: 1605-1621; Published in Advance September 18, 2019, doi:10.1101/gr.249219.119
    ...3 deposition, such as EZH2, KMT2 (MLL) family members, and KDM6A, are translocated or mutated and/or their expression is altered in many malignancies (Suvà et al. 2013; Dawson 2017). Such defects had been documented in a handful of studies. In detail, analyses in established prostate (Gal-Yam et al...
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