Searching journal content for articles similar to Salipante et al. 25 (1): 119.

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  1. Research: Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains
    • Yoko Arimizu,
    • Yumi Kirino,
    • Mitsuhiko P. Sato,
    • Koichi Uno,
    • Toshio Sato,
    • Yasuhiro Gotoh,
    • Frédéric Auvray,
    • Hubert Brugere,
    • Eric Oswald,
    • Jacques G. Mainil,
    • Kelly S. Anklam,
    • Dörte Döpfer,
    • Shuji Yoshino,
    • Tadasuke Ooka,
    • Yasuhiro Tanizawa,
    • Yasukazu Nakamura,
    • Atsushi Iguchi,
    • Tomoko Morita-Ishihara,
    • Makoto Ohnishi,
    • Koichi Akashi,
    • Tetsuya Hayashi,
    • and Yoshitoshi Ogura
    Genome Res. September 2019 29: 1495-1505; Published in Advance August 22, 2019, doi:10.1101/gr.249268.119
    ...to highly virulent human pathogens under the bovine-adapted genetic background. Our data highlight the importance of large-scale sequencing of animal strains in the studies of zoonotic pathogens.Escherichia coli are commensal intestinal inhabitants of a wide range of vertebrates. Several types of strains...
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  2. Research: Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131
    • Teemu Kallonen,
    • Hayley J. Brodrick,
    • Simon R. Harris,
    • Jukka Corander,
    • Nicholas M. Brown,
    • Veronique Martin,
    • Sharon J. Peacock,
    • and Julian Parkhill
    Genome Res. August 2017 27: 1437-1449; Published in Advance July 18, 2017, doi:10.1101/gr.216606.116
    ...2 0QQ, United Kingdom; 6Cambridge University Hospitals NHS Foundation Trust, Cambridge CB2 0QQ, United Kingdom; 7British Society of Antimicrobial Chemotherapy, Birmingham B1 3NJ, United Kingdom; 8London School of Hygiene and Tropical Medicine, London WC1E 7HT, United Kingdom Escherichia coli...
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  3. Methods: Inferring genomic flux in bacteria
    • Xavier Didelot,
    • Aaron Darling,
    • and Daniel Falush
    Genome Res. February 2009 19: 306-317; Published in Advance November 17, 2008, doi:10.1101/gr.082263.108
    ...) How to become a uropathogen: Comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains . Proc. Natl. Acad. Sci. 103 : 12879 – 12884 . Chain, P. , Larimer, F. , Land, M. , Stilwagen, S. , Larsson, P. , Bearden, S. , Chu, M. , Oyston, P. , Forsman, M. , Andersson, S. , Lindler...
  4. Method: Accurate reconstruction of bacterial pan- and core genomes with PEPPAN
    • Zhemin Zhou,
    • Jane Charlesworth,
    • and Mark Achtman
    Genome Res. November 2020 30: 1667-1679; Published in Advance October 14, 2020, doi:10.1101/gr.260828.120
    ...diversity of bacterial genomic changes, including gene duplications and HGTs (leading to paralogs), homologous recombination, and large-scale gene insertions and deletions. We therefore performed our first benchmarks by comparing a pan calculated from 15 manually curated Salmonella enterica annotations...
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