Searching journal content for articles similar to Ruby et al. 17 (12): 000.

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  1. Research: Rapid evolution of piRNA clusters in the Drosophila melanogaster ovary
    • Satyam P. Srivastav,
    • Cédric Feschotte,
    • and Andrew G. Clark
    Genome Res. May 2024 34: 711-724; Published in Advance May 15, 2024, doi:10.1101/gr.278062.123
    ...in Drosophila melanogaster, much less is known about the origin and evolution of piCs in this or any other species. To investigate piC origin and evolution, we use a population genomic approach to compare piC activity and sequence composition across eight geographically distant strains of D. melanogaster...
  2. Research: Deep experimental profiling of microRNA diversity, deployment, and evolution across the Drosophila genus
    • Jaaved Mohammed,
    • Alex S. Flynt,
    • Alexandra M. Panzarino,
    • Md Mosharrof Hossain Mondal,
    • Matthew DeCruz,
    • Adam Siepel,
    • and Eric C. Lai
    Genome Res. January 2018 28: 52-65; Published in Advance December 12, 2017, doi:10.1101/gr.226068.117
    ...reveal miRNA diversity among Drosophila species and principles underlying their emergence and evolution.MicroRNAs (miRNAs) are an extensive class of ∼22-nt RNAs that play important regulatory roles in diverse eukaryotic species (Flynt and Lai 2008; Axtell et al. 2011). In the canonical metazoan pathway...
  3. Research: Redundant and incoherent regulations of multiple phenotypes suggest microRNAs’ role in stability control
    • Zhongqi Liufu,
    • Yixin Zhao,
    • Li Guo,
    • Guangxia Miao,
    • Juan Xiao,
    • Yang Lyu,
    • Yuxin Chen,
    • Suhua Shi,
    • Tian Tang,
    • and Chung-I Wu
    Genome Res. October 2017 27: 1665-1673; Published in Advance September 13, 2017, doi:10.1101/gr.222505.117
    ...of a substantially expanded set of Drosophila microRNAs. Genome Res 17: 1850–1864. Rutherford SL, Lindquist S. 1998. Hsp90 as a capacitor for morphological evolution. Nature 396: 336–342. Salmena L, Poliseno L, Tay Y, Kats L, Pandolfi PP. 2011. A ceRNAhypothesis: the Rosetta Stone of a hidden RNA language? Cell 146...
  4. Resource: The landscape of miRNA editing in animals and its impact on miRNA biogenesis and targeting
    • Lishi Li,
    • Yulong Song,
    • Xinrui Shi,
    • Jianheng Liu,
    • Shaolei Xiong,
    • Wanying Chen,
    • Qiang Fu,
    • Zichao Huang,
    • Nannan Gu,
    • and Rui Zhang
    Genome Res. January 2018 28: 132-143; Published in Advance December 12, 2017, doi:10.1101/gr.224386.117
    ...types in human. However, high-level editing is mostly found in neuronal tissues in mouse and Drosophila. Interestingly, the edited miRNAs in neuronal and non-neuronal tissues in human gain two distinct sets of new targets, which are significantly associated with cognitive and organ developmental...
  5. Research: Cnidarian microRNAs frequently regulate targets by cleavage
    • Yehu Moran,
    • David Fredman,
    • Daniela Praher,
    • Xin Z. Li,
    • Liang Meng Wee,
    • Fabian Rentzsch,
    • Phillip D. Zamore,
    • Ulrich Technau,
    • and Hervé Seitz
    Genome Res. April 2014 24: 651-663; Published in Advance March 18, 2014, doi:10.1101/gr.162503.113
    ...cleavage. (A) Distribution of miRNA:mRNA alignment mismatch scores in Nematostella vectensis, Homo sapiens, Drosophila melanogaster, and Arabidopsis thaliana, shown as the difference in abundance between miRNAs and matching shuffledmiRNAs, counting the fraction of sequences in each set having a best match...
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  6. Research: Death of new microRNA genes in Drosophila via gradual loss of fitness advantages
    • Guang-An Lu,
    • Yixin Zhao,
    • Hao Yang,
    • Ao Lan,
    • Suhua Shi,
    • Zhongqi Liufu,
    • Yumei Huang,
    • Tian Tang,
    • Jin Xu,
    • Xu Shen,
    • and Chung-I Wu
    Genome Res. September 2018 28: 1309-1318; Published in Advance July 26, 2018, doi:10.1101/gr.233809.117
    ...of functional retrogenes in Drosophila. Genome Biol 8: R11. ↵Bartel DP. 2004. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281–297. ↵Berezikov E, Liu N, Flynt AS, Hodges E, Rooks M, Hannon GJ, Lai EC. 2010. Evolutionary flux of canonical microRNAs and mirtrons in Drosophila. Nat Genet 42...
  7. Research: Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
    • Eugene Berezikov,
    • Nicolas Robine,
    • Anastasia Samsonova,
    • Jakub O. Westholm,
    • Ammar Naqvi,
    • Jui-Hung Hung,
    • Katsutomo Okamura,
    • Qi Dai,
    • Diane Bortolamiol-Becet,
    • Raquel Martin,
    • Yongjun Zhao,
    • Phillip D. Zamore,
    • Gregory J. Hannon,
    • Marco A. Marra,
    • Zhiping Weng,
    • Norbert Perrimon,
    • and Eric C. Lai
    Genome Res. February 2011 21: 203-215; Published in Advance December 22, 2010, doi:10.1101/gr.116657.110
    ...Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence Eugene Berezikov 1 , Nicolas Robine 2 , Anastasia Samsonova 3 , Jakub O. Westholm 2 , Ammar Naqvi 2 , Jui-Hung Hung...
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  8. Letter: Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line
    • Nelson C. Lau,
    • Nicolas Robine,
    • Raquel Martin,
    • Wei-Jen Chung,
    • Yuzo Niki,
    • Eugene Berezikov,
    • and Eric C. Lai
    Genome Res. October 2009 19: 1776-1785; Published in Advance June 18, 2009, doi:10.1101/gr.094896.109
    ...Abundant primary piRNAs, endo-siRNAs, and microRNAs in a Drosophila ovary cell line Nelson C. Lau 1 , 2 , 6 , 7 , 8 , Nicolas Robine 3 , 6 , Raquel Martin 3 , Wei-Jen Chung 3 , Yuzo Niki 4 , Eugene Berezikov 5...
  9. Research: MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
    • Maria Ninova,
    • Matthew Ronshaugen,
    • and Sam Griffiths-Jones
    Genome Res. January 2016 26: 85-96; Published in Advance October 30, 2015, doi:10.1101/gr.193367.115
    ...of total RNA to investigate the relationships with microRNA target expression. We show microRNA maternal loading and sequence-specific 3′ end nontemplate oligoadenylation of maternally deposited microRNAs that is conserved between Tribolium and Drosophila . We further uncover large clusters encoding...
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  10. 12 Drosophila Genomes/Letter: Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    • Alexander Stark,
    • Pouya Kheradpour,
    • Leopold Parts,
    • Julius Brennecke,
    • Emily Hodges,
    • Gregory J. Hannon,
    • and Manolis Kellis
    Genome Res. December 2007 17: 1865-1879; Published in Advance November 7, 2007, doi:10.1101/gr.6593807
    ...differences in the set of predicted target genes. The novel predicted miRNAs lead to 37 novel miRNA families with unique 5′ seed sequences, doubling the number of miRNA families and, thus, the diversity of miRNA targeting in Drosophila . Our results also lead to several new insights into miRNA biology. We...
    OPEN ACCESS ARTICLE
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