Searching journal content for articles similar to Ruault et al. 31 (3): 411.

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  1. Research: Physical tethering and volume exclusion determine higher-order genome organization in budding yeast
    • Harianto Tjong,
    • Ke Gong,
    • Lin Chen,
    • and Frank Alber
    Genome Res. July 2012 22: 1295-1305; Published in Advance May 22, 2012, doi:10.1101/gr.129437.111
    ...that tethering of heterochromatic regions to nuclear landmarks and random encounters of chromosomes in the confined nuclear volume are sufficient to explain the higher-order organization of the budding yeast genome. We have quantitatively characterized the contact patterns and nuclear territories that emerge...
  2. Research: High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
    • Houssam Hajjoul,
    • Julien Mathon,
    • Hubert Ranchon,
    • Isabelle Goiffon,
    • Julien Mozziconacci,
    • Benjamin Albert,
    • Pascal Carrivain,
    • Jean-Marc Victor,
    • Olivier Gadal,
    • Kerstin Bystricky,
    • and Aurélien Bancaud
    Genome Res. November 2013 23: 1829-1838; Published in Advance September 27, 2013, doi:10.1101/gr.157008.113
    ...mediated by chromosomes and nuclear proteins. Crowding is expected to screen out hydrodynamic effects, which otherwise induce long-range interactions in between chromosome segments (Doi and Edwards 1988), so that nearest-neighbor elastic interactions between consecutive chromosome segments dominate...
  3. LETTER: Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast
    • Heiko Schober,
    • Véronique Kalck,
    • Miguel A. Vega-Palas,
    • Griet Van Houwe,
    • Daniel Sage,
    • Michael Unser,
    • Marc R. Gartenberg,
    • and Susan M. Gasser
    Genome Res. February 2008 18: 261-271; Published in Advance December 20, 2007, doi:10.1101/gr.6687808
    ...such long-range interactions, we differentially tagged pairs of chromosome ends and developed an automated three-dimensional measuring tool that determines distances between two telomeres. In yeast, all chromosomal ends terminate in TG1–3 and middle repetitive elements, yet subgroups of telomeres also share...
  4. Research: Intergenic accumulation of RNA polymerase II maintains the potential for swift transcriptional restart upon release from quiescence
    • Manuela Baquero Pérez,
    • Gertjan Laenen,
    • Isabelle Loïodice,
    • Mickaël Garnier,
    • Ugo Szachnowski,
    • Antonin Morillon,
    • Myriam Ruault,
    • and Angela Taddei
    Genome Res. October 2025 35: 2226-2239; Published in Advance August 12, 2025, doi:10.1101/gr.279874.124
    ...-enter the cell cycle upon sensing of external cues. Q cells are responsive to the environment and flexible enough to adapt to available resources. In budding yeast, quiescent nuclear features are drastically distinct from those observed in nutrient replete conditions: The nuclear volume is reduced; the telomeres...
  5. Method: Model-based analysis of DNA replication profiles: predicting replication fork velocity and initiation rate by profiling free-cycling cells
    • Ariel Gispan,
    • Miri Carmi,
    • and Naama Barkai
    Genome Res. February 2017 27: 310-319; Published in Advance December 27, 2016, doi:10.1101/gr.205849.116
    ...origins in yku80Δ, rif1Δ, sir2Δ, sir3Δ, and sir4Δwere defined within 50 kb from the telomeres (Methods). (C) Replication profile around centromeres. Shown are the replication profiles around the centromere (marked in a dashed red line) of Chromosome 16 for the indicated strains (green) compared...
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