Searching journal content for articles similar to Rual et al. 14 (10b): 2128.

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  1. LETTER: Revisiting the Saccharomyces cerevisiae predicted ORFeome
    • Qian-Ru Li,
    • Anne-Ruxandra Carvunis,
    • Haiyuan Yu,
    • Jing-Dong J. Han,
    • Quan Zhong,
    • Nicolas Simonis,
    • Stanley Tam,
    • Tong Hao,
    • Niels J. Klitgord,
    • Denis Dupuy,
    • Danny Mou,
    • Ilan Wapinski,
    • Aviv Regev,
    • David E. Hill,
    • Michael E. Cusick,
    • and Marc Vidal
    Genome Res. August 2008 18: 1294-1303; Published in Advance May 23, 2008, doi:10.1101/gr.076661.108
    ...Revisiting the Saccharomyces cerevisiae predicted ORFeome Qian-Ru Li 1 , 6 , Anne-Ruxandra Carvunis 1 , 2 , 6 , Haiyuan Yu 1 , 6 , Jing-Dong J. Han 1 , 6 , 7 , Quan Zhong 1 , Nicolas Simonis 1 , Stanley Tam 1...
  2. RESOURCE: WormBase as an Integrated Platform for the C. elegans ORFeome
    • Nansheng Chen,
    • Daniel Lawson,
    • Keith Bradnam,
    • Todd W. Harris,
    • and Lincoln D. Stein
    Genome Res. October 15, 2004 14: 2155-2161; doi:10.1101/gr.2521304
    ...WormBase as an Integrated Platform for the C. elegans ORFeome Nansheng Chen 1 , 3 , Daniel Lawson 2 , Keith Bradnam 2 , Todd W. Harris 1 , and Lincoln D. Stein 1 1 Cold Spring Harbor Laboratory, Cold Spring Harbor, New...
  3. Resource: Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome
    • Kourosh Salehi-Ashtiani,
    • Chenwei Lin,
    • Tong Hao,
    • Yun Shen,
    • David Szeto,
    • Xinping Yang,
    • Lila Ghamsari,
    • HanJoo Lee,
    • Changyu Fan,
    • Ryan R. Murray,
    • Stuart Milstein,
    • Nenad Svrzikapa,
    • Michael E. Cusick,
    • Frederick P. Roth,
    • David E. Hill,
    • and Marc Vidal
    Genome Res. December 2009 19: 2334-2342; Published in Advance October 2, 2009, doi:10.1101/gr.098640.109
    ...Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome Kourosh Salehi-Ashtiani 1 , 4 , 5 , Chenwei Lin 1 , 4 , Tong Hao 1 , 4 , Yun Shen 1 , David Szeto 1 , Xinping Yang 1 , Lila...
    OPEN ACCESS ARTICLE
  4. RESOURCE: Generation of the Brucella melitensis ORFeome Version 1.1
    • Amélie Dricot,
    • Jean-François Rual,
    • Philippe Lamesch,
    • Nicolas Bertin,
    • Denis Dupuy,
    • Tong Hao,
    • Christophe Lambert,
    • Régis Hallez,
    • Jean-Marc Delroisse,
    • Jean Vandenhaute,
    • Ignacio Lopez-Goñi,
    • Ignacio Moriyon,
    • Juan M. Garcia-Lobo,
    • Félix J. Sangari,
    • Alastair P. MacMillan,
    • Sally J. Cutler,
    • Adrian M. Whatmore,
    • Stephanie Bozak,
    • Reynaldo Sequerra,
    • Lynn Doucette-Stamm,
    • Marc Vidal,
    • David E. Hill,
    • Jean-Jacques Letesson,
    • and Xavier De Bolle
    Genome Res. October 15, 2004 14: 2201-2206; doi:10.1101/gr.2456204
    ...frames (ORFs) and constructed an ORFeome library of 3091 Gateway Entry clones, each containing a defined ORF. This first version of the Brucella ORFeome (v1.1) provides the coding sequences in a user-friendly format amenable to high-throughput functional genomic and proteomic experiments, as the ORFs...
  5. RESOURCE: From ORFeome to Biology: A Functional Genomics Pipeline
    • Stefan Wiemann,
    • Dorit Arlt,
    • Wolfgang Huber,
    • Ruth Wellenreuther,
    • Simone Schleeger,
    • Alexander Mehrle,
    • Stephanie Bechtel,
    • Mamatha Sauermann,
    • Ulrike Korf,
    • Rainer Pepperkok,
    • Holger Sültmann,
    • and Annemarie Poustka
    Genome Res. October 15, 2004 14: 2136-2144; doi:10.1101/gr.2576704
    ...genomics and proteomics pipeline. Starting with the large-scale production and molecular analysis of cDNAs, a human ORFeome resource is generated. This physical resource is systematically exploited in high-throughput applications of protein localization, cell-based assays, and proteomics applications...
  6. LETTER: C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions
    • Philippe Lamesch,
    • Stuart Milstein,
    • Tong Hao,
    • Jennifer Rosenberg,
    • Ning Li,
    • Reynaldo Sequerra,
    • Stephanie Bosak,
    • Lynn Doucette-Stamm,
    • Jean Vandenhaute,
    • David E. Hill,
    • and Marc Vidal
    Genome Res. October 15, 2004 14: 2064-2069; doi:10.1101/gr.2496804
    ...predictions. In total, ∼12,500 C. elegans ORFs are now available as Gateway Entry clones for various reverse proteomics (ORFeome v3.1). This work illustrates why the cloning of a complete C. elegans ORFeome, and likely the ORFeomes of other multicellular organisms, needs to be an iterative process...
  7. RESOURCE: Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library
    • Jean-François Rual,
    • Julian Ceron,
    • John Koreth,
    • Tong Hao,
    • Anne-Sophie Nicot,
    • Tomoko Hirozane-Kishikawa,
    • Jean Vandenhaute,
    • Stuart H. Orkin,
    • David E. Hill,
    • Sander van den Heuvel,
    • and Marc Vidal
    Genome Res. October 15, 2004 14: 2162-2168; doi:10.1101/gr.2505604
    .... elegans ORFeome resource contains 11,942 cloned ORFs ( Reboul et al. 2003 ) and constitutes a platform for proteomic and functional genomic approaches ( Reboul et al. 2003 ; Rual et al. 2004 ). The C. elegans ORFeome resource is dynamic, with new ORFs added or corrected continuously ( Lamesch et al. 2004...
  8. PERSPECTIVE: ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List
    • Michael A. Brasch,
    • James L. Hartley,
    • and Marc Vidal
    Genome Res. October 15, 2004 14: 2001-2009; doi:10.1101/gr.2769804
    ...). This explains why the original primers did not generate any product in the first pass of the C. elegans ORFeome project ( Reboul et al. 2003 ). Despite the absent ORFs, Version 1.1 has already been used to express thousands of proteins for structural proteomics, proteome-wide Y2H mapping, -wide RNAi analyses...
  9. LETTER: New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones
    • Anita G. Fernandez,
    • Kristin C. Gunsalus,
    • Jerry Huang,
    • Ling-Shiang Chuang,
    • Nancy Ying,
    • Hsiao-lan Liang,
    • Caroline Tang,
    • Aaron J. Schetter,
    • Charles Zegar,
    • Jean-François Rual,
    • David E. Hill,
    • Valerie Reinke,
    • Marc Vidal,
    • and Fabio Piano
    Genome Res. February 2005 15: 250-259; doi:10.1101/gr.3194805
    ...New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones Anita G. Fernandez 1 , 4 , Kristin C. Gunsalus 1 , 4 , Jerry Huang 1 , Ling-Shiang Chuang 1 , Nancy Ying 1 , Hsiao-lan Liang 1...
  10. Methods: Development of a microscopic platform for real-time monitoring of biomolecular interactions
    • Yasuhiro Sasuga,
    • Tomomi Tani,
    • Masahito Hayashi,
    • Hisashi Yamakawa,
    • Osamu Ohara,
    • and Yoshie Harada
    Genome Res. January 2006 16: 132-139; Published in Advance December 12, 2005, doi:10.1101/gr.4235806
    ...ORFeome version 1.1: Experimental verification of the annotation and resource for proteome-scale protein expression. Nat. Genet. 34 : 35 -41. ↵ Rhodes, D.R., Barrette, T.R., Rubin, M.A., Ghosh, D., and Chinnaiyan, A.M. 2002 . Meta-analysis of microarrays: Interstudy validation of gene expression profiles...
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