Searching journal content for articles similar to Ronald et al. 15 (2): 284.

Displaying results 1-10 of 28

For checked items

view abstracts
download to citation manager

Select this article
Method: A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data
- Daniel A. Skelly,
- Marnie Johansson,
- Jennifer Madeoy,
- Jon Wakefield,
- and Joshua M. Akey
Genome Res. October 2011 21: 1728-1737; Published in Advance August 26, 2011, doi:10.1101/gr.119784.110
...A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data Daniel A. Skelly 1 , 3 , Marnie Johansson 1 , Jennifer Madeoy 1 , Jon Wakefield 2 and Joshua M. Akey 1 , 3...
Select this article
METHODS: A System for Specific, High-throughput Genotyping by Allele-specific Primer Extension on Microarrays
- Tomi Pastinen,
- Mirja Raitio,
- Katarina Lindroos,
- Päivi Tainola,
- Leena Peltonen,
- and Ann-Christine Syvänen
Genome Res. July 1, 2000 10: 1031-1042; doi:10.1101/gr.10.7.1031
..., Uppsala University, 75185-Uppsala, Sweden Abstract This study describes a practical system that allows high-throughput genotyping of single nucleotide polymorphisms (SNPs) and detection of mutations by allele-specific extension on primer arrays. The method relies on the sequence...
Select this article
Methods: Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays
- Daisuke Komura,
- Fan Shen,
- Shumpei Ishikawa,
- Karen R. Fitch,
- Wenwei Chen,
- Jane Zhang,
- Guoying Liu,
- Sigeo Ihara,
- Hiroshi Nakamura,
- Matthew E. Hurles,
- Charles Lee,
- Stephen W. Scherer,
- Keith W. Jones,
- Michael H. Shapero,
- Jing Huang,
- and Hiroyuki Aburatani
Genome Res. December 2006 16: 1575-1584; Published in Advance November 22, 2006, doi:10.1101/gr.5629106
...) Noise reduction from genotyping microarrays using probe level information . In Silico Biol. 6 : 9 . ↵ Laframboise, T. , Weir, B.A. , Zhao, X. , Beroukhim, R. , Li, C. , Harrington, D. , Sellers, W.R. , Meyerson, M. ( 2005 ) Allele-specific amplification in cancer revealed by SNP array analysis . PLo...
Select this article
RESEARCH: Simultaneous Genotyping and Species Identification Using Hybridization Pattern Recognition Analysis of Generic Mycobacterium DNA Arrays
- Thomas R. Gingeras,
- Ghassan Ghandour,
- Eugene Wang,
- Anthony Berno,
- Peter M. Small,
- Francis Drobniewski,
- David Alland,
- Edward Desmond,
- Mark Holodniy,
- and Jorg Drenkow
Genome Res. May 1, 1998 8: 435-448; doi:10.1101/gr.8.5.435
...-Density Oligonucleotide Arrays The high-density oligonucleotide array used to detect the mutations conferring rifampin resistance in M. tuberculosis was also used to simultaneously genotype and speciate nontuberculous isolates. As the interspecies sequence variation for the rpoB gene of some of the nontuberculous...
Select this article
Methods: A Versatile Assay for High-Throughput Gene Expression Profiling on Universal Array Matrices
- Jian-Bing Fan,
- Joanne M. Yeakley,
- Marina Bibikova,
- Eugene Chudin,
- Eliza Wickham,
- Jing Chen,
- Dennis Doucet,
- Philippe Rigault,
- Baohong Zhang,
- Richard Shen,
- Celeste McBride,
- Hai-Ri Li,
- Xiang-Dong Fu,
- Arnold Oliphant,
- David L. Barker,
- and Mark S. Chee
Genome Res. May 2004 14: 878-885; doi:10.1101/gr.2167504
...gene, for 96 samples in parallel. The c D NA-mediated a nnealing, s election, extension and l igation (DASL) assay targets specific transcripts, using oligonucleotides containing unique address sequences that can hybridize to universal arrays. Cell-specific gene expression profiles were obtained...
Select this article
Methods: Decoding Randomly Ordered DNA Arrays
- Kevin L. Gunderson,
- Semyon Kruglyak,
- Michael S. Graige,
- Francisco Garcia,
- Bahram G. Kermani,
- Chanfeng Zhao,
- Diping Che,
- Todd Dickinson,
- Eliza Wickham,
- Jim Bierle,
- Dennis Doucet,
- Monika Milewski,
- Robert Yang,
- Chris Siegmund,
- Juergen Haas,
- Lixin Zhou,
- Arnold Oliphant,
- Jian-Bing Fan,
- Steven Barnard,
- and Mark S. Chee
Genome Res. May 2004 14: 870-877; Published in Advance April 12, 2004, doi:10.1101/gr.2255804
...single nucleotide polymorphism genotyping and gene expression profiling. The algorithm requires only a few labels and several sequential hybridizations to identify thousands of different DNA sequences with great accuracy. We have decoded tens of thousands of arrays, each with 1520 sequences represented...
Select this article
Methods: High-throughput DNA methylation profiling using universal bead arrays
- Marina Bibikova,
- Zhenwu Lin,
- Lixin Zhou,
- Eugene Chudin,
- Eliza Wickham Garcia,
- Bonnie Wu,
- Dennis Doucet,
- Neal J. Thomas,
- Yunhua Wang,
- Ekkehard Vollmer,
- Torsten Goldmann,
- Carola Seifart,
- Wei Jiang,
- David L. Barker,
- Mark S. Chee,
- Joanna Floros,
- and Jian-Bing Fan
Genome Res. March 2006 16: 383-393; Published in Advance January 31, 2006, doi:10.1101/gr.4410706
...reported differentially methylated genes ( Adorjan et al. 2002 ; Esteller 2002 ; Tsou et al. 2002 ). The assay procedure is similar to that described previously for standard SNP genotyping ( Fan et al. 2003 ), except that four oligonucleotides, two allele-specific oligonucleotides (ASOs), and two locus...
OPEN ACCESS ARTICLE
Select this article
RESEARCH: Strategies for Mutational Analysis of the Large Multiexon ATM Gene Using High-Density Oligonucleotide Arrays
- Joseph G. Hacia,
- Bryan Sun,
- Nathaniel Hunt,
- Keith Edgemon,
- Deborah Mosbrook,
- Christiane Robbins,
- Stephen P.A. Fodor,
- Danilo A. Tagle,
- and Francis S. Collins
Genome Res. December 1, 1998 8: 1245-1258; doi:10.1101/gr.8.12.1245
..., they have been used to identify and genotype single nucleotide polymorphisms ( Wang et al. 1998 ), monitor gene expression ( Lockhart et al. 1996 ), analyze genetic screens ( Shoemaker et al. 1996 ), design antisense oligonucleotides ( Milner et al. 1997 ), identify bacterial species ( Gingeras et al. 1998...
Select this article
RESEARCH: Minisequencing: A Specific Tool for DNA Analysis and Diagnostics on Oligonucleotide Arrays
- Tomi Pastinen,
- Ants Kurg,
- Andres Metspalu,
- Leena Peltonen,
- and Ann-Christine Syvänen
Genome Res. June 1, 1997 7: 606-614; doi:10.1101/gr.7.6.606
...that the minisequencing approach is more straight forward and specific for multiplex mutation detection on oligonucleotide arrays than hybridization with allele-specific probes. Here we describe a solid-phase minisequencing assay for nine disease-causing mutations in an oligonucleotide array format. The mutations were...
Select this article
METHODS: Genotyping on a Thermal Gradient DNA Chip
- Tomoharu Kajiyama,
- Yuji Miyahara,
- Larry J. Kricka,
- Peter Wilding,
- David J. Graves,
- Saul Surrey,
- and Paolo Fortina
Genome Res. March 1, 2003 13: 467-475; doi:10.1101/gr.790603
...and mutant oligonucleotides, resulting in a 4 × 5 matrix (Fig. 4 A). View this table: In this window In a new window Table 1. PCR Primers, Product Size (bp), and Array-Bound Allele-Specific Oligonucleotide Probes Used for Genotyping Results of target hybridization demonstrate ability to distinguish the three...

For checked items

view abstracts
download to citation manager

Searching journal content for articles similar to Ronald et al. 15 (2): 284.

Search Results

Modify Results

This search

Preprint Server

Current Issue

In This Issue

Citation format:
Results / page:
Results order: