Searching journal content for articles similar to Romiguier et al. 20 (8): 1001.

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  1. Research: GC-biased gene conversion drives accelerated evolution of ultraconserved elements in mammalian and avian genomes
    • Anguo Liu,
    • Nini Wang,
    • Guoxiang Xie,
    • Yang Li,
    • Xixi Yan,
    • Xinmei Li,
    • Zhenliang Zhu,
    • Zhuohui Li,
    • Jing Yang,
    • Fanxin Meng,
    • Mingle Dou,
    • Weihuang Chen,
    • Nange Ma,
    • Yu Jiang,
    • Yuanpeng Gao,
    • and Yu Wang
    Genome Res. October 2023 33: 1673-1689; Published in Advance October 26, 2023, doi:10.1101/gr.277784.123
    ...and bird test lineages, respectively (Fig. 3A; Supplemental Table S9). We also found negative associations between the number of fast-evolving UCEs and two life-history traits, body mass and generation time (Supplemental Fig. S10), although there are other confounding factors (such as mutation rate...
  2. Method: A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y
    • Marta Tomaszkiewicz,
    • Samarth Rangavittal,
    • Monika Cechova,
    • Rebeca Campos Sanchez,
    • Howard W. Fescemyer,
    • Robert Harris,
    • Danling Ye,
    • Patricia C.M. O'Brien,
    • Rayan Chikhi,
    • Oliver A. Ryder,
    • Malcolm A. Ferguson-Smith,
    • Paul Medvedev,
    • and Kateryna D. Makova
    Genome Res. April 2016 26: 530-540; Published in Advance March 2, 2016, doi:10.1101/gr.199448.115
    ...). For families with intraspecific size variation (Supplemental Table S12), size averages (numbers above bars) and ranges (error bars) are shown. Figure 5. The workflow for sequencing mammalian Y Chromosomes. Novel strategy to assemble sex chromosomes Genome Research 535 www..org for chromosome enrichment...
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  3. Research: Extreme heterochiasmy and high rates of sex-reversed recombination result in large yet homomorphic sex chromosomes in the Emei moustache toad
    • Siyu Xie,
    • Jun Li,
    • Wanyan Chen,
    • Lydia J.M. Fong,
    • Chunhua Huang,
    • Yan Feng,
    • Qingbo Ai,
    • Mian Zhao,
    • Judith E. Mank,
    • and Hua Wu
    Genome Res. June 2025 35: 1325-1336; Published in Advance April 24, 2025, doi:10.1101/gr.280161.124
    ...of assembly (Lbor.v1) and sex chromosomes of L. boringii. (A) Various metrics calculated in 500 kb sliding windows across each chromosome. From outer to inner: (I) sizes of 13 pseudochromosomes; (II) gene density; (III) repeat sequence distribution; (IV) GC content (%); and (V) SNP density (numbers of SNP per...
  4. Resource: A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes
    • Jing Liu,
    • Zongji Wang,
    • Jing Li,
    • Luohao Xu,
    • Jiaqi Liu,
    • Shaohong Feng,
    • Chunxue Guo,
    • Shengchan Chen,
    • Zhanjun Ren,
    • Jinpeng Rao,
    • Kai Wei,
    • Yuezhou Chen,
    • Erich D. Jarvis,
    • Guojie Zhang,
    • and Qi Zhou
    Genome Res. March 2021 31: 497-511; Published in Advance January 6, 2021, doi:10.1101/gr.271569.120
    ...ratio per chromosome versus the size of the chromosome (blue for microchromosomes, red for macrochromosomes). The size of the dots is scaled to the average GC content of each chromosome. The inner plot shows the positive correlation between GC content and turtle versus emu syntenic length ratio. Each...
  5. Method: Quantification of GC-biased gene conversion in the human genome
    • Sylvain Glémin,
    • Peter F. Arndt,
    • Philipp W. Messer,
    • Dmitri Petrov,
    • Nicolas Galtier,
    • and Laurent Duret
    Genome Res. August 2015 25: 1215-1228; Published in Advance May 20, 2015, doi:10.1101/gr.185488.114
    ...for the three populationsIn the EUR and EAS populations, B also correlates with recombination rates and GC content (Table 4). It should be noted that at this genomic scale (1 Mb), recombination landscapes are strongly conserved across populations, despite fine scale variations in recombination hotspot locations...
  6. Research: The genomic basis of evolutionary differentiation among honey bees
    • Bertrand Fouks,
    • Philipp Brand,
    • Hung N. Nguyen,
    • Jacob Herman,
    • Francisco Camara,
    • Daniel Ence,
    • Darren E. Hagen,
    • Katharina J. Hoff,
    • Stefanie Nachweide,
    • Lars Romoth,
    • Kimberly K.O. Walden,
    • Roderic Guigo,
    • Mario Stanke,
    • Giuseppe Narzisi,
    • Mark Yandell,
    • Hugh M. Robertson,
    • Nikolaus Koeniger,
    • Panuwan Chantawannakul,
    • Michael C. Schatz,
    • Kim C. Worley,
    • Gene E. Robinson,
    • Christine G. Elsik,
    • and Olav Rueppell
    Genome Res. July 2021 31: 1203-1215; Published in Advance May 4, 2021, doi:10.1101/gr.272310.120
    ...al. 2013; Terrapon et al. 2014; Kapheim et al. 2015; Harpur et al. 2017; Harrison et al. 2018). In contrast to the major focus on studying the genomic bases of the origin of sociality and associated traits, the maintenance and diversification of social traits has received limited attention (Simola et...
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  7. LETTER: Fast-X on the Z: Rapid evolution of sex-linked genes in birds
    • Judith E. Mank,
    • Erik Axelsson,
    • and Hans Ellegren
    Genome Res. May 2007 17: 618-624; Published in Advance April 6, 2007, doi:10.1101/gr.6031907
    ...of the chicken sequence, the microchromosomes differ from the larger chromosomes by showing higher gene density, fewer repeats, shorter introns, higher GC content, and much higher recombination rates ( International Chicken Genome Sequencing Consortium 2004 ). As several of these factors, in particular...
  8. Research: Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations
    • Zoe June Assaf,
    • Susanne Tilk,
    • Jane Park,
    • Mark L. Siegal,
    • and Dmitri A. Petrov
    Genome Res. December 2017 27: 1988-2000; Published in Advance October 27, 2017, doi:10.1101/gr.219956.116
    ...rates and patterns. Highlights of our results include: a high rate of multinucleotide mutation events at both short (∼5 bp) and long (∼1 kb) genomic distances, showing that mutation drives GC content lower in already GC-poor regions, and using our precise context-dependent mutation rates to predict long...
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