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Method: A novel assay to screen siRNA libraries identifies protein kinases required for chromosome transmission
- Mikhail Liskovykh,
- Nikolay V. Goncharov,
- Nikolai Petrov,
- Vasilisa Aksenova,
- Gianluca Pegoraro,
- Laurent L. Ozbun,
- William C. Reinhold,
- Sudhir Varma,
- Mary Dasso,
- Vadim Kumeiko,
- Hiroshi Masumoto,
- William C. Earnshaw,
- Vladimir Larionov,
- and Natalay Kouprina
Genome Res. October 2019 29: 1719-1732; Published in Advance September 12, 2019, doi:10.1101/gr.254276.119
...in the protection of integrity. A large proportion of CIN genes function in expected pathways such as in mitosis, DNA replication, and repair, but some act in biological pathways with unknown connections to chromosome segregation (e.g., tRNA synthesis, GPI anchors, and secretion) (Yuen et al. 2007; Stirling et al...
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RESOURCE: Advanced Integrated Mouse YAC Map Including BAC Framework
- Leonard C. Schalkwyk,
- Brian Cusack,
- Ilona Dunkel,
- Martina Hopp,
- Markus Kramer,
- Stefanie Palczewski,
- Jutta Piefke,
- Sabine Scheel,
- Michael Weiher,
- Gunther Wenske,
- Hans Lehrach,
- and Heinz Himmelbauer
Genome Res. December 1, 2001 11: 2142-2150; doi:10.1101/gr.176201
...167EJ (mouse chromosomes 17 and 3 on human background). The complete set of probes is publicly available. Sequence data for 955 markers have been deposited in GenBank. View this table: In this window In a new window Table 1. Markers on the Integrated MPI-MG YAC Map Streamlined Hybridization Procedures...
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Review: A systematic guide for identifying transcription factors that directly regulate the expression of a gene of interest
- Andrew D. Bates,
- Dawid Grzela,
- Maciej Studzian,
- Louise Brennan,
- Moli Williams,
- Conor Fawcett,
- Beth Hammond,
- Manreen Grewal,
- Marcin Ratajewski,
- Lukasz Pulaski,
- and Urszula L. McClurg
Genome Res. March 2026 36: 433-459; Published in Advance February 17, 2026, doi:10.1101/gr.281154.125
...regions in model organisms that combine data and predictions: The best-known (and available via many integrator tools) is ReMap (Hammal et al. 2022), but an interesting alternative is CistromeDB (Zheng et al. 2019). There are also time-honored genomic resources for specific model organisms...
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RESOURCE: Integrated and Sequence-Ordered BAC- and YAC-Based Physical Maps for the Rat Genome
- Martin Krzywinski,
- John Wallis,
- Claudia Gösele,
- Ian Bosdet,
- Readman Chiu,
- Tina Graves,
- Oliver Hummel,
- Dan Layman,
- Carrie Mathewson,
- Natasja Wye,
- Baoli Zhu,
- Derek Albracht,
- Jennifer Asano,
- Sarah Barber,
- Mabel Brown-John,
- Susanna Chan,
- Steve Chand,
- Alison Cloutier,
- Jonathon Davito,
- Chris Fjell,
- Tony Gaige,
- Detlev Ganten,
- Noreen Girn,
- Kurtis Guggenheimer,
- Heinz Himmelbauer,
- Thomas Kreitler,
- Stephen Leach,
- Darlene Lee,
- Hans Lehrach,
- Michael Mayo,
- Kelly Mead,
- Teika Olson,
- Pawan Pandoh,
- Anna-Liisa Prabhu,
- Heesun Shin,
- Simone Tänzer,
- Jason Thompson,
- Miranda Tsai,
- Jason Walker,
- George Yang,
- Mandeep Sekhon,
- LaDeana Hillier,
- Heike Zimdahl,
- Andre Marziali,
- Kazutoyo Osoegawa,
- Shaying Zhao,
- Asim Siddiqui,
- Pieter J. de Jong,
- Wes Warren,
- Elaine Mardis,
- John D. McPherson,
- Richard Wilson,
- Norbert Hübner,
- Steven Jones,
- Marco Marra,
- and Jacqueline Schein
Genome Res. April 2004 14: 766-779; doi:10.1101/gr.2336604
.... 1999 ), leaving 31,757 clones (see Methods). We constructed a map of each chromosome by integrating the YAC-linkage information with the known radiation hybrid map positions of the IRS markers using the co2 software package ( Hudson et al. 1995 ). Doubly linked contigs were identified, and then single...
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RESEARCH: A Physical Map of Human Chromosome 7: An Integrated YAC Contig Map with Average STS Spacing of 79 kb
- Gerard G. Bouffard,
- Jacquelyn R. Idol,
- Valerie V. Braden,
- Leslie M. Iyer,
- Aimee F. Cunningham,
- Lauren A. Weintraub,
- Jeffrey W. Touchman,
- Rose M. Mohr-Tidwell,
- Dale C. Peluso,
- Robert S. Fulton,
- Melinda S. Ueltzen,
- Jean Weissenbach,
- Charles L. Magness,
- and Eric D. Green
Genome Res. July 1, 1997 7: 673-692; doi:10.1101/gr.7.7.673
...A Physical Map of Human Chromosome 7: An Integrated YAC Contig Map with Average STS Spacing of 79 kb Gerard G. Bouffard 1 , Jacquelyn R. Idol 1 , Valerie V. Braden 1 , Leslie M. Iyer 1 , Aimee F. Cunningham 1 , Lauren A. Weintraub 1...
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ARTICLE: An integrated map of human chromosome 6p23.
- M G Olavesen,
- A F Davies,
- S J Broxholme,
- J L Wixon,
- G Senger,
- D Nizetic,
- R D Campbell,
- and J Ragoussis
Genome Res. November 1995 5: 342-358; doi:10.1101/gr.5.4.342
....-C. and Lehrach. H. 1994a. An integrated YAC-overlap and “cosmid-pocket” map of the human chromosome 21. Hum. Mol. Genet. 3: 759 – 770. Nizetic, D., , Monard, S. , Young, B. , Cotter, F. , Zehetner, G. , Lehrach. H. Nizetic, D., Monard, S. Young, B. Cotter, F. Zehetner, G. and Lehrach. H. 1994b. Construction...
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LETTER: An Integrated Physical Map for the Short Arm of Human Chromosome 5
- Ellen T. Peterson,
- Robert Sutherland,
- Donna L. Robinson,
- Leslie Chasteen,
- Meryl Gersh,
- Joan Overhauser,
- Larry L. Deaven,
- Robert K. Moyzis,
- and Deborah L. Grady
Genome Res. December 1, 1999 9: 1250-1267; doi:10.1101/gr.9.12.1250
...covers &gt;94% of 5p in four YAC contigs, bridges the centromere, and includes an additional 5 Mb of 5q DNA. The average marker density is 95 kb. This integrated 5p map will serve as a resource for the continuing localization of genes on the short arm of human chromosome 5 and as a framework for both...
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LETTER: A High-Resolution HAPPY Map of Dictyostelium discoideum Chromosome 6
- Bernard A. Konfortov,
- Helen M. Cohen,
- Alan T. Bankier,
- and Paul H. Dear
Genome Res. November 1, 2000 10: 1737-1742; doi:10.1101/gr.141700
...plasmid libraries or from subclones of YACs previously mapped to chromosome 6. The map appears to span the entire chromosome, although marker density is greater in some regions than in others and is lowest within the telomeric region. Our map largely supports previous gene-based maps of this chromosome...
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LETTER: Integrated YAC Contig Map of the Prader–Willi/Angelman Region on Chromosome 15q11–q13 with Average STS Spacing of 35 kb
- Susan L. Christian,
- Nehal K. Bhatt,
- Scott A. Martin,
- James S. Sutcliffe,
- Takeo Kubota,
- Bing Huang,
- Apiwat Mutirangura,
- A. Craig Chinault,
- Arthur L. Beaudet,
- and David H. Ledbetter
Genome Res. February 1, 1998 8: 146-157; doi:10.1101/gr.8.2.146
...Integrated YAC Contig Map of the Prader–Willi/Angelman Region on Chromosome 15q11–q13 with Average STS Spacing of 35 kb Susan L. Christian 1 , Nehal K. Bhatt 1 , Scott A. Martin 1 , James S. Sutcliffe 2 , Takeo Kubota 3 , Bing Huang...
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LETTER: A Fine Physical Map of the Rice Chromosome 4
- Qiang Zhao,
- Yu Zhang,
- Zhukuan Cheng,
- Mingsheng Chen,
- Shengyue Wang,
- Qi Feng,
- Yucheng Huang,
- Ying Li,
- Yesheng Tang,
- Bo Zhou,
- Zhehua Chen,
- Shuliang Yu,
- Jingjie Zhu,
- Xin Hu,
- Jie Mu,
- Kai Ying,
- Pei Hao,
- Lei Zhang,
- Yiqi Lu,
- Lei S. Zhang,
- Yilei Liu,
- Zhen Yu,
- Danlin Fan,
- Qijun Weng,
- Ling Chen,
- Tingting Lu,
- Xiaohui Liu,
- Peixin Jia,
- Tongguo Sun,
- Yongrui Wu,
- Yujun Zhang,
- Ying Lu,
- Can Li,
- Rong Wang,
- Haiyan Lei,
- Tao Li,
- Hao Hu,
- Mei Wu,
- Runquan Zhang,
- Jianping Guan,
- Jia Zhu,
- Gang Fu,
- Minghong Gu,
- Guofan Hong,
- Yongbiao Xue,
- Rod Wing,
- Jiming Jiang,
- and Bin Han
Genome Res. May 1, 2002 12: 817-823; doi:10.1101/gr.48902
.... Abstract As part of an international effort to completely sequence the rice genome, we have produced a fine bacterial artificial chromosome (BAC)-based physical map of the Oryza sativa japonica Nipponbare chromosome 4 through an integration of 114 sequenced BAC clones from a taxonomically related...

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