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  1. ...cycle in which multiple DNA breaks are simultaneously joined. Meier et al. 1626 Genome Research www..org In each case, the initial rearrangements (marked ❶ in Fig. 1C–E) comprised inverted rearrangements that demarcated sharp changes in copy number. These rearrangements most likely result frombreakage...
  2. ...on these repetitive regions (Fig. 3A). The remaining 40.1% of the de novo indels occurred in nonrepeat regions and did not lead to a copy count change (non-CCC). These likely result from imperfect double-stranded DNA break repairs by nonhomologous end joining (NHEJ) which can create indels at the repair junction...
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